Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120944g00021 ATGGCTACTACTAAATTCTGTACATACACATTGTTCCTTCTTACCTTTGCATTCTTCTTCATCAAGCTTAGTTCATCATCATCATCATCTGAGGTTGATGCCCTTCTATCCTTCAAGGCCTCCATTGAAGACTCCAAGAATGCTTTGTCAACTTGGTCAGACACTTCATCAACACACCACTGTAACTGGACTGGAATCTCATGCTCCATTACTACTACTAACTCACCTTCTGTAACTTCAATCACCCTTCAAAGCTTGAATCTTTCTGGTGATATCTCAGCTTCCATATGTGACCTTCCAAGTTTATCTCATCTCAACCTTGCTGACAACATCTTCAACCAGCCCATACCTCTTCACCTTTCACAGTGCAGTTCATTGGTGACTCTTAACATCAGCAACAACCTCATATGGGGGACTATCCCATCTCAGATTTCTCAGTTTTCTTCACTCAAAGTACTTGACTTCAGCAGAAACAAAATTGAAGGAATAATCCCTGATACCTTAGGCTCACTGGAGAATCTTCAAGTACTTAACATGGGGAGCAACTTGCTCTCAGGTACTCTTCCTCTTATCTTTGGAAACTTAACCAAGCTTGAGGTTCTTGATTTGTCCATGAATCCAAACTTGGAGAGTGAGATTCCACATGACGTTGGTCAACTCAAGAGCCTGAAGCAGCTTATGCTGCAGGGTTCTTCACTCCAAGGTGAAATTCCACCTTCTTTTGTGGGATTACTTGGCTTAACTCATTTAGATCTCTCTCAGAACAATCTCACAGGTAAAGTTCCTCAAGCACTTTCTTCTTCTTCTCTCAAGAACCTTGTTTCCTTTGATGTCTCACAGAACAAGCTCTCAGGGCCATTCCCAAGTGGAGTTTGCAAAGGCTCTATAATAAATCTCAGCCTCCACACAAATGCATTCACTGGTTTAATACCAAACAATTCCATTGGTGAATGCAAGAGTCTTGAGAGGTTCCAAGTTCAGAACAATGGTTTCTCTGGTGACTTTCCTTCTGCATTGTGGTCATTACCAAAAGTGAAGCTCATTAGAGCTGAGAACAACAGATTCTCAGGTCAAATACCTGAATCAGTATCTGAAGCTTCACAACTGGAGCAAGTTCAGCTTGACAACAACACCTTCTCTGGCAAAATTCCTCAAGGTCTTGGCCTTGTTAAAAGCTTATACAGATTCTCAGCATCACTCAACCACTTCTATGGTGAAATCCCACCAAACTTTTGTGACTCACCAGTTATGAGCATTGTGAACCTCTCACACAATTCTCTCTCTGGTCAAATCCCAGAGCTGAAGAAATGCAGGAAGCTAGTTTCACTTTCTTTGGCTGATAATAGTTTAACTGGAGAAATACCTTCTTCTCTTGCTGAGCTTCCAGTGTTGACTTACATTGACCTCTCAGACAACAACCTCACTGGTCCAATCCCAGAAGGGCTTCAGAATCTGAAGCTTGCACTTTTCAATGTTTCCTTCAATGATCTTTCAGGTAAAGTACCGTATTCCTTGATTTCAGGTCTTCCTGCTTCATTCTTGGAAGGAAATCCTGGTCTCTGTGGCCCTGGATTGGCCAATTCTTGTTCTGATGAAGCTCCAAGACACAAAAATGGTGGCATTACAACCATAACATGTGCACTGATCTCCTTAGCCTTTGTTGCTGGCACTGCCATTGTTGCTGGTGGCTTTGTATTGTATAAGAGATCATGTAAAGGGAACAACAATGAAGTAGTTGTTTGGAGATCAGTGTTCTTCTATCCCCTCAGGATCACTGAGCATGATCTTCTTATGGGAATGAATGAGAAGAGTTCAATGGGAAATGGTGGCATTTTTGGAAGAGTTTATGTTATGAACTTACCAAGTGGTGAACTTGTTGCTGTGAAGAAGCTAGTGAATTTCAGGAATCAGTCCTCAAAGAGTTTGAAATCTGAGGTCAAGACTCTGGCAAAGATTAGGCACAAGAACATTGTTAAGATTCTGGGGTTCTGCCACTCTGATGAGTCAGTTTTTCTTATATATGAGTTCTTGAATGAAGGGAGCTTAAGGGATTTGATTTTGAGGCCTGATTTTAAGCTGGAATGGAGTGTTAGGTTGAAGATTGCCATTGGAGTTGCTCAGGGACTTGCATATCTTCACAAGGACTACTCGCCGCGACTGCTTCACCGGAATGTCAAGTCGAGTAACATTCTTTTGGATGGAAACTTTGAGCCAAAACTCACAGATTTTGCTCTTGATAGAGTTCTTGGAGAAGCTGCATTTCAGTCTAGTTTGGATTCTGAAGCACCATCTTCCTGCTACATTGCACCAGAATATGGTTACAGCAAGAAAGCCACTGAGCAATTAGATGTGTATAGCTTTGGTGTTGTATTGCTAGAGCTAGTGAGTGGAAGACAAGCTGAGAAAGCAGATTCAAGTGATTCCATTATTGACATAGTGAAGTGGGTTAGAAGGAAAGTGAACATAGCAAATGGGGTGCAACAAATTCTTGACCGAAGAATATCATCATCAACCACCTGCCACCAAGAAATGGTTAGAGCCTTAGACATTGCACTCCGTTGCACCTCAGTGGTTCCTGAGAAGAGGCCATCAATGGTGGAAGTTGTCAAGTCTCTTCACTCCCTTGAATTAAGGACTTGCATTGCAGATTTGCAAGATCAACCACCAAATGAGGAACCCTCCAATATTCCAATCTGA 2697 0.4197 MATTKFCTYTLFLLTFAFFFIKLSSSSSSSEVDALLSFKASIEDSKNALSTWSDTSSTHHCNWTGISCSITTTNSPSVTSITLQSLNLSGDISASICDLPSLSHLNLADNIFNQPIPLHLSQCSSLVTLNISNNLIWGTIPSQISQFSSLKVLDFSRNKIEGIIPDTLGSLENLQVLNMGSNLLSGTLPLIFGNLTKLEVLDLSMNPNLESEIPHDVGQLKSLKQLMLQGSSLQGEIPPSFVGLLGLTHLDLSQNNLTGKVPQALSSSSLKNLVSFDVSQNKLSGPFPSGVCKGSIINLSLHTNAFTGLIPNNSIGECKSLERFQVQNNGFSGDFPSALWSLPKVKLIRAENNRFSGQIPESVSEASQLEQVQLDNNTFSGKIPQGLGLVKSLYRFSASLNHFYGEIPPNFCDSPVMSIVNLSHNSLSGQIPELKKCRKLVSLSLADNSLTGEIPSSLAELPVLTYIDLSDNNLTGPIPEGLQNLKLALFNVSFNDLSGKVPYSLISGLPASFLEGNPGLCGPGLANSCSDEAPRHKNGGITTITCALISLAFVAGTAIVAGGFVLYKRSCKGNNNEVVVWRSVFFYPLRITEHDLLMGMNEKSSMGNGGIFGRVYVMNLPSGELVAVKKLVNFRNQSSKSLKSEVKTLAKIRHKNIVKILGFCHSDESVFLIYEFLNEGSLRDLILRPDFKLEWSVRLKIAIGVAQGLAYLHKDYSPRLLHRNVKSSNILLDGNFEPKLTDFALDRVLGEAAFQSSLDSEAPSSCYIAPEYGYSKKATEQLDVYSFGVVLLELVSGRQAEKADSSDSIIDIVKWVRRKVNIANGVQQILDRRISSSTTCHQEMVRALDIALRCTSVVPEKRPSMVEVVKSLHSLELRTCIADLQDQPPNEEPSNIPI 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120944g00021 898 Gene3D Ribonuclease Inhibitor 292 407 IPR032675 -
Stsc120944g00021 898 SUPERFAMILY L domain-like 27 292 - -
Stsc120944g00021 898 Pfam Protein kinase domain 602 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120944g00021 898 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 677 880 - -
Stsc120944g00021 898 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 13 874 - -
Stsc120944g00021 898 Gene3D Ribonuclease Inhibitor 28 187 IPR032675 -
Stsc120944g00021 898 Gene3D Ribonuclease Inhibitor 408 530 IPR032675 -
Stsc120944g00021 898 Gene3D Ribonuclease Inhibitor 188 291 IPR032675 -
Stsc120944g00021 898 Gene3D Transferase(Phosphotransferase) domain 1 677 886 - -
Stsc120944g00021 898 FunFam Leucine-rich repeat family protein 30 189 - -
Stsc120944g00021 898 FunFam - 595 676 - -
Stsc120944g00021 898 SUPERFAMILY Protein kinase-like (PK-like) 609 872 IPR011009 -
Stsc120944g00021 898 ProSiteProfiles Protein kinase domain profile. 601 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120944g00021 898 SMART LRR_typ_2 195 220 IPR003591 -
Stsc120944g00021 898 SMART LRR_typ_2 461 484 IPR003591 -
Stsc120944g00021 898 SMART LRR_typ_2 147 170 IPR003591 -
Stsc120944g00021 898 SMART LRR_typ_2 270 294 IPR003591 -
Stsc120944g00021 898 SMART LRR_typ_2 171 194 IPR003591 -
Stsc120944g00021 898 SMART LRR_typ_2 99 123 IPR003591 -
Stsc120944g00021 898 SMART LRR_typ_2 244 267 IPR003591 -
Stsc120944g00021 898 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 268 532 - -
Stsc120944g00021 898 Pfam Leucine rich repeat 222 283 IPR001611 GO:0005515
Stsc120944g00021 898 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Stsc120944g00021 898 Pfam Leucine rich repeat 438 497 IPR001611 GO:0005515
Stsc120944g00021 898 Gene3D Phosphorylase Kinase; domain 1 594 676 - -
Stsc120944g00021 898 SMART LRR_sd22_2 147 176 - -
Stsc120944g00021 898 SMART LRR_sd22_2 461 484 - -
Stsc120944g00021 898 SMART LRR_sd22_2 244 267 - -
Stsc120944g00021 898 SMART LRR_sd22_2 195 211 - -
Stsc120944g00021 898 SMART LRR_sd22_2 270 301 - -
Stsc120944g00021 898 CDD STKc_IRAK 606 872 - -
Stsc120944g00021 898 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Stsc120944g00021 898 SUPERFAMILY L domain-like 295 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120944g00021 Stsc-Chr120944 83351 87063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120944g00021 31 875 Receptor kinase-like Gene Family AT5G06940 63.337 0.0 1036
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc120944g00021 Pkinase 2.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120944g00021 - - adu:107492922 1612.05