Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120944g00018 ATGGAGCAAACCACAGGAGTGTTGCGTGGATCCACTCACGACGACGTGGTATTAGAGTCAATTCAATTTAACGAAGAAATCCGGGGAATCATGGCGCCAGCGCCCGCGCCGGAAAACGCCAGCTCATTCACCGCGCTTCTCGAGCTACCGCCGACGCAGGCCGTTGAGCTCCTCCATTCTCCTGATTGCGCGCCCGCCGGTCGGGAACCGCCGTGCCACGTCAACGCCAACCAGAAACCCTACCTTCTTGACTCATACGGCGGCAATTTGACCTTCCCTTCCAACGCCGCGCTCATAGAACGCGCTGCCAAGTTCTCCGTCTTCGCTGGCGAGAACTCTTCGCCGGAGGATGCAGCTCGTCTGGCTCCGGCATCTTTACCCGGCGCGGTGAAGAATGAGCCTCAGGAAACCGATTCGAACCCCTGCTCCACGCAGGGGTGCGTTTCGGATCCCGCGGTTGAGACCAAGAATCAGAGGACCCCGAAGAGGAAGGAGCGAGAGAAGAAGGGTAAGGGGTCGTCGAAGAAGAGCAAGGGCATCGCCGATGAGTCCTCCGGCGACGGCGAAAAGCTTCCATACGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTGCAAGACCTGGTCCCCGGTTGCAACAAGATATCAGGAACAGCCTTGGTTCTGGATGAAATTATCAATCACGTGCAATCTCTACAACGTCAAGTGGAGTTCTTATCAATGAAATTAGCAGCTGTTAACCCAAGAATTGATTTCAGCCTAGATAGCTTGCTGGCTACTGATGGGTCATCTGTAATGGACAGCAACTTAACTAGCATGGCTACACCTGTTATGTGGCCAGAAAACCTAGCCGATGGTAACAGACAGCATTATCAACAACAGTGGCAATTTGATGCATTCCACCAACCACTTTGGGGGAGGGAAGAAGCCAACCATAATTTCGTGACTCCAGAACACTCACTTCTTAGTTATGACTCGTCTGCTAATTCAGCATCCCTTCACTCAAATCAATTGAAGATGGAGCTCTGA 1089 0.5253 MEQTTGVLRGSTHDDVVLESIQFNEEIRGIMAPAPAPENASSFTALLELPPTQAVELLHSPDCAPAGREPPCHVNANQKPYLLDSYGGNLTFPSNAALIERAAKFSVFAGENSSPEDAARLAPASLPGAVKNEPQETDSNPCSTQGCVSDPAVETKNQRTPKRKEREKKGKGSSKKSKGIADESSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQDLVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRIDFSLDSLLATDGSSVMDSNLTSMATPVMWPENLADGNRQHYQQQWQFDAFHQPLWGREEANHNFVTPEHSLLSYDSSANSASLHSNQLKMEL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120944g00018 362 MobiDBLite consensus disorder prediction 172 191 - -
Stsc120944g00018 362 Pfam Helix-loop-helix DNA-binding domain 206 253 IPR011598 GO:0046983
Stsc120944g00018 362 CDD bHLH_AtBPE_like 192 277 - -
Stsc120944g00018 362 MobiDBLite consensus disorder prediction 128 191 - -
Stsc120944g00018 362 Coils Coil 242 262 - -
Stsc120944g00018 362 FunFam transcription factor bHLH48-like isoform X1 199 271 - -
Stsc120944g00018 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 271 IPR036638 GO:0046983
Stsc120944g00018 362 SMART finulus 208 258 IPR011598 GO:0046983
Stsc120944g00018 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 252 IPR011598 GO:0046983
Stsc120944g00018 362 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 120 345 IPR024097 GO:0006355
Stsc120944g00018 362 MobiDBLite consensus disorder prediction 132 155 - -
Stsc120944g00018 362 Gene3D - 199 271 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120944g00018 Stsc-Chr120944 66986 72187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120944g00018 10 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.596 3.42e-103 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc120944g00018 HLH 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120944g00018 - - gmx:100814124 558.525