Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120944g00016 ATGCATCATATCACTTGCATCTTGCTCCTCTTCTGCCTCCTCTACCCACATTCCACACACACACTCAACTCCGACGGCCTCTCACTTCTGGCTCTCAAGGCTGCAGTCGACTCCGACCCAACCGGAGCCCTCTCAACCTGGTCCGACTCCGACCCGACCCCATGCCACTGGCCAGGAATCCTCTGCTCCCACAACAAGCGCGTGACACAACTCTCCCTCCCAAACAAGTCCCTCTCCGGCTACCTCCCCTCCGAGCTGGCATCCCTAACCGCTCTCAAGCTTCTCTCGCTCCCACACAACAACTTCTCAAGAACAATCCCTTCCCCTCTCTTCACCTCCCTCAACTCACTCCTCTTTCTCGACCTCTCCCACAACCAACTCACCGGCCCCATTCCCACCCAACTCCGATCCCTCAAATCTCTCCGCCATTTCGATCTATCCTCCAACTCCCTCAACGCCTCTCTCCCACAAGACCTTTCTCAACTCACTTCCCTCATCGGAACCTTCAATCTTTCCTTTAACCACTTCTCCGGCGAGATTCCCCCCTCTCTCGGAAACCTTCCAGTCATTGTCAGCATCGACCTCCGTGGAAACAATCTCACCGGAAAAATACCCCAAGTTGGCTCCCTCCTCAACCAGGGCCCCACCGCATTCGCCGGAAACCCTGGTCTCTGTGGTTTTCCACTCCAGAACTCGTGCCCTGACTCTCAGAAACCTAACATTTTCCCCGCAGATGAGCCTCAGAACCCCAAGGCACTTCGCGCCGGCGCCGGCGGCAATGACAGTACTCCCGGAGAAGAAGCTAAGGCTAAGGAACGTAGCGGGTCCGTCGCGGTCCTCGTGATCTCGGGTCTTTCCCTGGTGGTCGGCGTAGTTTCTATCTCGCTGTGGGTTTTCCGGCGACGGTGGAACAACGACGACGACAAAATGAGGAACAGAAAATTGAACAATGAGGTTAATGGTGGTGGAGATGGAACAGTAGGAGGAGGAGGAGGAGGAGAGGGGCAACAAGGTAAATTCGTTTTGGTGGATGAAGGGTTTAACTTGGAGCTCGAAGATTTGTTGAGAGCTTCTGCTTACGTCGTTGGCAAGAGTAGGAGCGGAATCGTGTACAAAGTCGTCGGAGTAGGGAAGGGTGGAAATTGTGCGCCTCCCCCGCCGGCAACTGTTGTGGCCGTCCGGCGACTCAGCGAGGGAGATGCCACGTGGCGGTTGAAGGAGTTCGAGTGGGAGATGGAGGCTATTGCGAAGGTTCGGCACCCAAATGTGGTTCCTTTAAGAGCTTATTACTTCGCAAATGATGAGAAGCTTCTCATCACTGATTTCATCCGCAATGGAAGCTTGCATGCTGCTTTGCACGGCGAGTCTTCCAATTCATTGCAGACATTATCATGGACAGCAAGGTTGAAAATTGCCCAAGAAGCAGCACGGGGCTTGATGTACATCCATGAGTTTGGTGGCCGGAAATATGTCCATGGGAACCTAAAATCAACAAAAATCTTATTGGACGACGATCTCCACCCTTACATATCAGGTTTTGGACTAACCCGTCTCGGCTTGGGTACCACAAAGTCATCCGCAATGGCACCAAGACGGCAGAGTTCCAGTGGATCCTCTACGATGGTTTCAAAGGCTGCAGCTTCTTCTAATAACTACTTGGCTCCTGAGGTTCGCATGGCAGGTGGTAGATTCACTCAGAAATGCGATGTGTACTCTTTTGGCATAATTCTGTTAGAACTTTTGACTGGTAAACTTCCGGATTTCGGACCAGAAAACGACGACAAGGTGCTGGAGAGTTTTGTGAGGAAAGCATTCAGAGAGGAGCAGCCATTGTCCGAGATCATAGACCCGGCTCTTCTGCCTGAGGTTTATGCCAAGAAACAAGTTGTTTCTGCATTTCATGTGGCTCTGAACTGCACCGAACTGGATCCGGAACTGCGTCCTAGGATGAAAACTGTGTCTGAGAGCCTTGATCACATCAAGATTCAGTGA 1992 0.5236 MHHITCILLLFCLLYPHSTHTLNSDGLSLLALKAAVDSDPTGALSTWSDSDPTPCHWPGILCSHNKRVTQLSLPNKSLSGYLPSELASLTALKLLSLPHNNFSRTIPSPLFTSLNSLLFLDLSHNQLTGPIPTQLRSLKSLRHFDLSSNSLNASLPQDLSQLTSLIGTFNLSFNHFSGEIPPSLGNLPVIVSIDLRGNNLTGKIPQVGSLLNQGPTAFAGNPGLCGFPLQNSCPDSQKPNIFPADEPQNPKALRAGAGGNDSTPGEEAKAKERSGSVAVLVISGLSLVVGVVSISLWVFRRRWNNDDDKMRNRKLNNEVNGGGDGTVGGGGGGEGQQGKFVLVDEGFNLELEDLLRASAYVVGKSRSGIVYKVVGVGKGGNCAPPPPATVVAVRRLSEGDATWRLKEFEWEMEAIAKVRHPNVVPLRAYYFANDEKLLITDFIRNGSLHAALHGESSNSLQTLSWTARLKIAQEAARGLMYIHEFGGRKYVHGNLKSTKILLDDDLHPYISGFGLTRLGLGTTKSSAMAPRRQSSSGSSTMVSKAAASSNNYLAPEVRMAGGRFTQKCDVYSFGIILLELLTGKLPDFGPENDDKVLESFVRKAFREEQPLSEIIDPALLPEVYAKKQVVSAFHVALNCTELDPELRPRMKTVSESLDHIKIQ 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120944g00016 663 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Stsc120944g00016 663 SUPERFAMILY Protein kinase-like (PK-like) 361 659 IPR011009 -
Stsc120944g00016 663 FunFam Leucine-rich repeat receptor-like protein kinase 140 235 - -
Stsc120944g00016 663 Gene3D Ribonuclease Inhibitor 18 79 IPR032675 -
Stsc120944g00016 663 Gene3D Ribonuclease Inhibitor 80 241 IPR032675 -
Stsc120944g00016 663 PRINTS Leucine-rich repeat signature 117 130 - -
Stsc120944g00016 663 PRINTS Leucine-rich repeat signature 138 151 - -
Stsc120944g00016 663 ProSiteProfiles Protein kinase domain profile. 356 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120944g00016 663 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 8 661 IPR046959 -
Stsc120944g00016 663 Pfam Protein tyrosine and serine/threonine kinase 387 657 IPR001245 GO:0004672|GO:0006468
Stsc120944g00016 663 MobiDBLite consensus disorder prediction 236 270 - -
Stsc120944g00016 663 MobiDBLite consensus disorder prediction 314 333 - -
Stsc120944g00016 663 SUPERFAMILY L domain-like 25 230 - -
Stsc120944g00016 663 FunFam Leucine-rich repeat receptor-like kinase 27 139 - -
Stsc120944g00016 663 Gene3D Phosphorylase Kinase; domain 1 343 442 - -
Stsc120944g00016 663 Gene3D Transferase(Phosphotransferase) domain 1 443 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120944g00016 Stsc-Chr120944 51082 54625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120944g00016 22 661 Receptor kinase-like Gene Family AT3G57830 57.165 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc120944g00016 PK_Tyr_Ser-Thr 5.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120944g00016 - - gmx:100796011 901.353