Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120944g00015 ATGGATTCCAGTTCCCGTTTTCATCACCATCATCATCAACAGCAACAGCAACAGCAACAGCAGCTAAACTCATCACCATCATCATCAGGATTGCTTCGATTTCGCTCTGCTCCTGCTTCAGTCATCGAACAATTACAAGTTGAAGGATCTTGTTCTTCTCAACAGGCCGAGAGGTCCTCCTTCTTGAGGTTCTTGAATTCCAATAATAATGGTAGTGGAGATGGTGCATCTGCTTCTTTCAGAGACTTTCAGGACAACAATAACAAGCCGCCGCCACCGCCGCCGCCACATCATCATCACAACCATTCAACTTCCTCCGCGGATCTACCAAGGCAGAGTAGTTTTCCCCCTCCGCATTTCTCCTTCCACAACAAGCATGGGTATGATAGTAATACAAATACGACTATGATGAAAGGTATTGAAAACTACAGCAGCAGTAAACAAGCCGGTGAACTTAGTCTATCGACAATGAACAATCAAATTAGCTTCTCATCATCAAGAAGCCCTTCTTCTTCATCAGCAGCAATCCATAATAACAATGGTGGATTATTTCCTAATTATGATTTTTGGAATGAGATATCATGCAAGAGGGACGAACCAAATAGGATTATCTTTGATGCTAATCATCAGAATGAAGAGTTTGGAAATAATAAAGTAGTTGTTCATACAATAAGGCATCAACTAAGTTTTCCAAAAGCGGCATCAGAAATGTTTGGAATGGAGAATATGATTCACTTTCCATTATCAGATTCTGTTCCATGTAAAATCAGAGCCAAAAGAGGCTGTGCTACTCATCCCAGAAGCATTGCCGAGAGGGTGAGAAGGACTCGGATCAGTGAACGAATGAGAAAATTGCAAGAGCTTGTTCCAAACATGGACAAGCAAGCAAGCACAGCAGACATGTTGGACATGGCTGTAGGATACATTAAAGATCTTCAGAAACAATTCAAGAAACTGAGTGACAGAAAGGCTAAATGCAAGTGTATAAGAATGAAGAAGTTAGATTCATCAAAAAATTCTTGA 1023 0.4086 MDSSSRFHHHHHQQQQQQQQQLNSSPSSSGLLRFRSAPASVIEQLQVEGSCSSQQAERSSFLRFLNSNNNGSGDGASASFRDFQDNNNKPPPPPPPHHHHNHSTSSADLPRQSSFPPPHFSFHNKHGYDSNTNTTMMKGIENYSSSKQAGELSLSTMNNQISFSSSRSPSSSSAAIHNNNGGLFPNYDFWNEISCKRDEPNRIIFDANHQNEEFGNNKVVVHTIRHQLSFPKAASEMFGMENMIHFPLSDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQASTADMLDMAVGYIKDLQKQFKKLSDRKAKCKCIRMKKLDSSKNS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120944g00015 340 FunFam Transcription factor bHLH130 family 263 332 - -
Stsc120944g00015 340 MobiDBLite consensus disorder prediction 65 86 - -
Stsc120944g00015 340 Gene3D - 263 335 IPR036638 GO:0046983
Stsc120944g00015 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 265 327 IPR036638 GO:0046983
Stsc120944g00015 340 Pfam Helix-loop-helix DNA-binding domain 267 313 IPR011598 GO:0046983
Stsc120944g00015 340 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 45 330 - -
Stsc120944g00015 340 MobiDBLite consensus disorder prediction 14 34 - -
Stsc120944g00015 340 SMART finulus 268 318 IPR011598 GO:0046983
Stsc120944g00015 340 MobiDBLite consensus disorder prediction 65 135 - -
Stsc120944g00015 340 MobiDBLite consensus disorder prediction 1 35 - -
Stsc120944g00015 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 262 312 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120944g00015 Stsc-Chr120944 45780 48899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120944g00015 26 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 39.368 1.09e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc120944g00015 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120944g00015 - - ahf:112758816 375.941