Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120944g00010 ATGGCTGCTACAAGTGCTAATAGTGTTCTACTCTACATCTTCTCATGGTTAGGCCTTGTTGTTTTCTCTTCACTCCTCAAGTACCTGATTGGCAAAACAAGGAGCACAAAAAGAACTGAAACCCCACTATCTCCACCATCACTACCAATAATTGGACACCTTCACCTTATAGGCTCAGTAATACCAAAGTCATTCCATGCCTTAAGCAAACTCTATGGCCCTCTTATTCACCTTCGTTTGGGTGCTTCAACTTGCATACTTGTCTCCAACGTACAAGTTGCAAAACAAGTGTTGAAAACCAATGAGATCAATTTCATCAACAGACCTCACTTTGGGTCCTCTGAGTACTACCTCTATAAAGGCTTTAATTTTGTTACTGCACCATATGGCCCTTATTGGAGGTTCATGAAGAAGCTATGCATGACTCAACTTCTCTCCAGTTCTCAGCTTGGGAGATTCATGCACATTAGAGAACAAGAGATTAAGAAGCTCTTGAAATCACTTGTGGATTGTTCTAGCGAGGGCAGAGAGTGTGACTTGTGTTTTGAGCTTACTACTTTGACCAACAATATCCTGTGTAGGATGGCCATGAGCACTACATGTCTGGATAAAGATAAAAATAGTAATGATGATGCTAATGAGATTCATGGATTGGTTAAGGAGTTTATGGAACTTGCTGCTAAATTGAGCATTGGCGAGGTTCTTGGGCCTTTGGGTAAATTGGATATATTTGGGTATGGGAAAAAGCTTTTCAAAACATTAAGCAGATTTGACCAGATCTTGGAGCGGATCATGGAGGAACATGAGAACAACAAATGTGATGATCATGAAGGAGAAACATGGGACATGATGGATGTATTATTGCAAGTGTATAACCATCCAAATGCTCAAGAGAGATTAACTAGGAATCACATCAAGGGCTTCTTCCTAGATATTTTCCTTGCGGGAACAGACACTACTTCAGTGGCATTGCTTTGGACCATGGCAGAGATCTTAAACCGTCCAACTGTGCTCAAGAAGTTGAGGCCGGAGATTGATGCAGTGGTGGGTTCAACCAGGTTGGTCAACGAATCGGACGTTCCAAAACTCCCTTACCTCCAGGCTGTTGTAAAGGAAGCTCTAAGGCTCCATCCATCGGCACCGTTGGTTCTCAGAGAAGCTGTAGAAGATTGCATGATCAACGGCTACAATATAAAGAAGCAAACAAGAACAATTATCAACGTGTACGCCGTTATGCGGGACCCAGAAGCATGGGCCAACCCGGAAGAGTTCATACCAGAGAGATTCTTGGAAGCTACTGATCATCTGAGTAAAATGAGTGTTAATGATGTAAAATATGTTCCGTTTGGGTTTGGTAAGAGAGGGTGCCCTGGTGCTTCTCTTGCTTTAACTGTCATAAATGTGACGGTTGCTTCGTTAATTCAATGTTTTAATTGGAGAATAAAGGGTGGAGATAAGGTTAATATGGAAGAAGGGTCCTCTTTTTCTACAGGATTGGCACAACCACTTGTTTGTTACCCTCTTACTTGTTTTAATCCATTCTCTCTCTCGCCTTGA 1557 0.42 MAATSANSVLLYIFSWLGLVVFSSLLKYLIGKTRSTKRTETPLSPPSLPIIGHLHLIGSVIPKSFHALSKLYGPLIHLRLGASTCILVSNVQVAKQVLKTNEINFINRPHFGSSEYYLYKGFNFVTAPYGPYWRFMKKLCMTQLLSSSQLGRFMHIREQEIKKLLKSLVDCSSEGRECDLCFELTTLTNNILCRMAMSTTCLDKDKNSNDDANEIHGLVKEFMELAAKLSIGEVLGPLGKLDIFGYGKKLFKTLSRFDQILERIMEEHENNKCDDHEGETWDMMDVLLQVYNHPNAQERLTRNHIKGFFLDIFLAGTDTTSVALLWTMAEILNRPTVLKKLRPEIDAVVGSTRLVNESDVPKLPYLQAVVKEALRLHPSAPLVLREAVEDCMINGYNIKKQTRTIINVYAVMRDPEAWANPEEFIPERFLEATDHLSKMSVNDVKYVPFGFGKRGCPGASLALTVINVTVASLIQCFNWRIKGGDKVNMEEGSSFSTGLAQPLVCYPLTCFNPFSLSP 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120944g00010 518 Gene3D Cytochrome P450 31 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00010 518 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 24 497 - -
Stsc120944g00010 518 SUPERFAMILY Cytochrome P450 44 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00010 518 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Stsc120944g00010 518 CDD CYP93 73 507 - -
Stsc120944g00010 518 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00010 518 PRINTS E-class P450 group I signature 367 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00010 518 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00010 518 PRINTS E-class P450 group I signature 93 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00010 518 PRINTS E-class P450 group I signature 304 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00010 518 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00010 518 PRINTS E-class P450 group I signature 407 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00010 518 PRINTS E-class P450 group I signature 324 350 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00010 518 PRINTS E-class P450 group I signature 187 205 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00010 518 Pfam Cytochrome P450 42 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00010 518 FunFam Cytochrome P450 family protein 33 505 - -
Stsc120944g00010 518 PRINTS P450 superfamily signature 315 332 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00010 518 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00010 518 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00010 518 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120944g00010 Stsc-Chr120944 29779 31720 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120944g00010 7 514 Cytochrome P450 AT2G42250 49.222 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120944g00010 - - gmx:106794180 709.138