Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120944g00008 ATGGCAGACTTACAAGGCTACATTCAACTCTTGCTAATTTGCTTAGCTTCTACCATTTTCATCTGGTCCATAATACTAAGAAAAAGAAAGCAAAACGAATCTTCTTTGCCGCTTCCGCCGGGTCCTAAAGCCGTACCTATCATCGGCCACCTTCACCTCCTCTCCTCAACACCACACCAAGATTTCTACAAATTCTCAACACAATATGGACCCATCATTCACCTCTACCTTGGCTCCTCCCCTTGTGTGGTGGTTTCCACGGCCGAGGCAGCGAAGGAGTTCCTTAAGACACACGAAACCTCCTTCTCGGACCGCCCTGCACAAACTGTAGCAGTAGAGAGCTTAACCTATGGCTTCAAGGACTTCTTGTTTGCCCCGTACGGACCTTACTGGAAATTCATGAAGAAGCTGTGCATGTCGGAGCTTCTCGGCGGAAAAATGCTCCATCAACTCCTTCACGTAAGGCAGCAAGAGACAAATAGATTCCTTAGCGTGCTGGTGAAGAAAGGGGTGGCTGGTGAGGCCGTGGATCTCGGGGGGCAACTCATGACACTCTCCAACAACATTGTTTCGAGGATGATTATGGGACAAACAAGCTGTGGCGAGGGAGAGAGTGACGAGGAGGAGGTGAGAAAGCTGGTGGCGGACACGGCGGAGCTGACGGGGAAGTTCAACGTGTCAGATTTCTTGTGGTTCTTAAAAGGTCTTGATATTCTGGGATTCAAGAAGAAGCTTAAGGAGATTCGGGTAAGGTTCGATGCCTTGCTGAACAGAGCAATTGAGGAGCATCAACATGAAAGAAGAAAGAACAAGGATGAGGGTGCTAGGGATATTCTTGATGCTCTTCTTGACATATCTGAAGATGAAACTGCTGATATCAAATTGGATACTGAAAACATCAAGGCCTTCATAATGGACATACTTGTGGCAGGGACCGATACAACGGCCGTGACAATGGAATGGGCGATGGCAGAGTTAATGAAGAACCCAGGCGTTATGGAGAAAGCGCATCAAGAGCTGGATGCTGTGGTTGGAAAGAAGAGGATAGTTGAAGAATCTGACATTCCCAACCTTCCTTACATTCAAGCAATTGTTAAAGAAACACTAAGGCTTCATCCCGCAGGTCCATTAATATTCAGGCAATCTTCTAAAACGGCTATGGTAAAAGGTTATGAGATTCCAGCAAAAACTCGTTTGTTCATCAATGTGTGGGCTATTGGTAGAGATCCTAAGCATTGGGAGAATCCATTAGAGTTCACGCCGAAGAGATTCATTGAAAAACAGGTAGATGTAAGAGGACAACAATATGAGTTAATTCCATTTGGGAGTGGAAGAAGAATGTGTCCTGGAACATCTCTTGCTTTGCAAGTTGCGCATGTGACTTTGGCTGCTATGCTTCAGTGCTTTGAATGGAAGGTTGAGGATCATAGGATCCTTGACATGGAAGAGAAACCTGCTGGGATTATCACTCCAAGGGCTCACCCTCTTATTGCTTTCCCTCTTCCAAGGCTTAATCCTTTTCCTTCTATTTCATTCAGATAG 1542 0.4585 MADLQGYIQLLLICLASTIFIWSIILRKRKQNESSLPLPPGPKAVPIIGHLHLLSSTPHQDFYKFSTQYGPIIHLYLGSSPCVVVSTAEAAKEFLKTHETSFSDRPAQTVAVESLTYGFKDFLFAPYGPYWKFMKKLCMSELLGGKMLHQLLHVRQQETNRFLSVLVKKGVAGEAVDLGGQLMTLSNNIVSRMIMGQTSCGEGESDEEEVRKLVADTAELTGKFNVSDFLWFLKGLDILGFKKKLKEIRVRFDALLNRAIEEHQHERRKNKDEGARDILDALLDISEDETADIKLDTENIKAFIMDILVAGTDTTAVTMEWAMAELMKNPGVMEKAHQELDAVVGKKRIVEESDIPNLPYIQAIVKETLRLHPAGPLIFRQSSKTAMVKGYEIPAKTRLFINVWAIGRDPKHWENPLEFTPKRFIEKQVDVRGQQYELIPFGSGRRMCPGTSLALQVAHVTLAAMLQCFEWKVEDHRILDMEEKPAGIITPRAHPLIAFPLPRLNPFPSISFR 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120944g00008 513 Gene3D Cytochrome P450 23 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00008 513 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00008 513 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00008 513 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00008 513 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00008 513 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00008 513 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00008 513 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00008 513 PRINTS E-class P450 group I signature 402 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00008 513 CDD CYP93 70 500 - -
Stsc120944g00008 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 441 450 IPR017972 GO:0005506|GO:0016705
Stsc120944g00008 513 Pfam Cytochrome P450 39 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00008 513 SUPERFAMILY Cytochrome P450 39 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00008 513 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00008 513 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00008 513 PRINTS P450 superfamily signature 448 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00008 513 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120944g00008 513 PANTHER CYTOCHROME P450 98A9 11 505 - -
Stsc120944g00008 513 FunFam Cytochrome P450 family protein 30 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120944g00008 Stsc-Chr120944 24675 26450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120944g00008 1 503 Cytochrome P450 AT5G06900 48.016 2.22e-169 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120944g00008 K24188 - gmx:100815706 705.286