Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120943g00020 ATGGGGAGATCACCAAGTGGGAGTAGTGATGAAGAGAGTGGGTTGAAGAAGGGTCCATGGACACCCGAAGAGGATAGAATATTGGTGGAATACATAAAGAAAAACGGCCATGGAAGTTGGAGAGCGCTCCCTAAGATTGCAGGTTTGAACAGATGTGGCAAGAGTTGCAGGCTCAGGTGGACCAACTACCTCAGGCCTGATATCAAGAGAGGAAAATTCTCCGAGCAAGAAGAGCAACTCATCATCAATTTACATGAAGTTCTTGGCAATAAGTGGTCAGCAATAGCAGGTCATCTGCCAGGAAGAACAGACAACGAAATCAAGAATTTCTGGAACACTCATCTCAGAAAGAAGCTTCTTCAAATGGGGTTAGATCCAGTCACTCATCGTCCAAGAACAGATCATCATCATCACCTCCAACTTCTTTCAAATCTTCATCACCTGCTTCTCGCTGCAAACATTCTTAACAACAACAACAACAATAATCCTCTAATAAACACTCTTCTATTTAACTCTGATCATGCCAAACTCCAAATCCTCCAAAACATGCTTCAAATCCTTGGCACCACTACTAATAATAATAACAATAATCTTGCCCCAAACTTGGAGCTACTCCTTAATCAACAATTTGGTCCAATATCGTCCTCGTCGTCGTCATCAGTTCCAAATGGTTTCTATGAATCTTTAGGGTTGAATCAATCTATGCTCCAAAACCTTTGTAGTAGTAGTGGTAATGGTTTTTTCTTCCCTTGTCATAATCAAAATCAGCCAAATTTCCAAAACTTTGAAGCTCTTAATAATCAGCACAACATGAATAGTAATGAGAATGATCACGTTCTTGATGTCACAAAGAATTCTTCTAATAATTCTCCTACAACACCATTGAATTATTATTCATCATCATCACTTCCAAATCTGGTTTCAGCCTCATCATCACCTCATGATAAATGTTCCAACAAAGTAAATAATAATAACCAAAATGATGAGTGCTATAATAATAATAATCACAATAATGGTTCTAATAATTCCCCAACTTCAATCAACAACTTTGAAATGTGGGCAGATTTCATGTATGAGGAAGCAAGTGATGTTTATTGGAAACACATCATCGAGTAA 1116 0.3826 MGRSPSGSSDEESGLKKGPWTPEEDRILVEYIKKNGHGSWRALPKIAGLNRCGKSCRLRWTNYLRPDIKRGKFSEQEEQLIINLHEVLGNKWSAIAGHLPGRTDNEIKNFWNTHLRKKLLQMGLDPVTHRPRTDHHHHLQLLSNLHHLLLAANILNNNNNNNPLINTLLFNSDHAKLQILQNMLQILGTTTNNNNNNLAPNLELLLNQQFGPISSSSSSSVPNGFYESLGLNQSMLQNLCSSSGNGFFFPCHNQNQPNFQNFEALNNQHNMNSNENDHVLDVTKNSSNNSPTTPLNYYSSSSLPNLVSASSSPHDKCSNKVNNNNQNDECYNNNNHNNGSNNSPTSINNFEMWADFMYEEASDVYWKHIIE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120943g00020 371 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Stsc120943g00020 371 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 310 - -
Stsc120943g00020 371 FunFam MYB-related transcription factor 16 69 - -
Stsc120943g00020 371 CDD SANT 72 115 IPR001005 -
Stsc120943g00020 371 SMART sant 16 66 IPR001005 -
Stsc120943g00020 371 SMART sant 69 117 IPR001005 -
Stsc120943g00020 371 Gene3D - 72 119 - -
Stsc120943g00020 371 CDD SANT 19 64 IPR001005 -
Stsc120943g00020 371 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Stsc120943g00020 371 MobiDBLite consensus disorder prediction 268 343 - -
Stsc120943g00020 371 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Stsc120943g00020 371 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Stsc120943g00020 371 MobiDBLite consensus disorder prediction 1 21 - -
Stsc120943g00020 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Stsc120943g00020 371 Gene3D - 16 69 - -
Stsc120943g00020 371 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Stsc120943g00020 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Stsc120943g00020 371 FunFam Transcription factor MYB39 72 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120943g00020 Stsc-Chr120943 97414 99463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120943g00020 1 371 MYB Transcription Factor Family AT5G16770 47.733 7.14e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc120943g00020 Myb_DNA-binding 3.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120943g00020 K09422 - gmx:547488 338.576