Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120943g00011 ATGAGAGACCTTTGCAGAAACTTCCAGCGTGGCAGCTGCCAATACGGAGATAGGTGTAAATTCATACATGCTGTTCCACAACAGCAACAACAACAAAGGAATTTGAATAATAATAGCAATTTTCATGGTTTTGGGGTTCAGAATGGTTTTCATCAACAGCAGCAGCAAAATGCTAACCCTTTTGGATTTGGGTCTAAATCTGCTTCACAACCACAACAACAACAGCAGCAAAAGACCAATCCTTTTGGGTTTGGGGTGCAGAACAACAACAATTCACAATTCAAAGGGACCCCTCAACAGAACCAATTTAAGCCTTTTGAAAACAAATGGACTCGGGGTGGCGCTTCGCGTCAATCTGATAACAACCCCCAATCATCGAATCACGAGTGTACAGATCCTGAGGCCTGCAAGCGCCAGATTGCAGAAGATTTCAAGCAAGAGAAGCCACTCTGGATACTTACATGCTATGGACATGCTAAAGGTGCGCCTTGCGACATAGTTGGTGATATTAGCTATGAAGAACTGAGGGCAGAAGCTTATGAGGATGCTAAACGAGGAATGAGCTTGCAATCAATTGTTGAGAAAGAGAGAAATACACTAAATTCCAAGTTGGCCGAGTTCCAGAAACTGCTTACTGAACCCTACAGAATGCCATTTAATCCTTCTCTTAACAGTCAAAAAAACCAAAATGCAAATCCATTTTCAATGCCTATACAAAATAATGGTCAACATAATGCAAATCCATTTTCAACGCCTATACAAAATAATGGTCAGCATAATGCAAATCCATTTTCATTAACTACACAAAACAATGGTCCTGTGTCAGTCTCCAGCTTTAGCCAACTGGGTGCTTCATTGAACACTGGTTTTGATAGGCCCACTGCACCAGCAGCGAACACTCCAGCACAGTCTAGTTTCTTCGGAAGTGGAGGGAACACTTTTGCACCCAACACTGCAAACCCAAGCAGCAGAGGCTTCTCAGGTGCTCCAAGCAGCCCCTTCTCTCCCCCAGCGGGGTCAACAATGTTCCCGAATTCAACTTCTCAGCAACCATCCTTTGGCTTCAATAACTTGAGCTCCACTCCAATGTTTCAGACTACACCAGATGTTCAATCGTCAAGCATGTCCCAAGAGAATGTTTCCACAGATCTCAGTATTTGGTTAAAAGAGAAATGGAATCCTGGAGAGATTCCTGAAGAAGCTCCTCCAGATTCAGTTGTTCGGTAG 1227 0.4344 MRDLCRNFQRGSCQYGDRCKFIHAVPQQQQQQRNLNNNSNFHGFGVQNGFHQQQQQNANPFGFGSKSASQPQQQQQQKTNPFGFGVQNNNNSQFKGTPQQNQFKPFENKWTRGGASRQSDNNPQSSNHECTDPEACKRQIAEDFKQEKPLWILTCYGHAKGAPCDIVGDISYEELRAEAYEDAKRGMSLQSIVEKERNTLNSKLAEFQKLLTEPYRMPFNPSLNSQKNQNANPFSMPIQNNGQHNANPFSTPIQNNGQHNANPFSLTTQNNGPVSVSSFSQLGASLNTGFDRPTAPAANTPAQSSFFGSGGNTFAPNTANPSSRGFSGAPSSPFSPPAGSTMFPNSTSQQPSFGFNNLSSTPMFQTTPDVQSSSMSQENVSTDLSIWLKEKWNPGEIPEEAPPDSVVR 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120943g00011 408 MobiDBLite consensus disorder prediction 222 381 - -
Stsc120943g00011 408 SUPERFAMILY CCCH zinc finger 3 27 IPR036855 GO:0046872
Stsc120943g00011 408 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 88 406 - -
Stsc120943g00011 408 MobiDBLite consensus disorder prediction 56 133 - -
Stsc120943g00011 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 2 23 IPR000571 GO:0046872
Stsc120943g00011 408 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Stsc120943g00011 408 MobiDBLite consensus disorder prediction 56 130 - -
Stsc120943g00011 408 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Stsc120943g00011 408 Gene3D - 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120943g00011 Stsc-Chr120943 61082 64971 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc120943g00011 zf-CCCH 1.7e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120943g00011 K14321 - gmx:100814339 432.95