Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120942g00004 ATGGAAATTGATTTGCACACATGTGAGCCATGGCAGCTTCCTGAGGTGGCTAAGCTCAATGCAAATGAGTGGTACTTCTTCAGCTTCCGTGACCGCAAATACGCCACCGGGTTTCGCACCAATCGCGCCACGACATCTGGCTACTGGAAAGCGACCGGGAAGGATCGGACAGTCCTCGATCCCATCACACGCGAAGTTGTAGGGATGAGGAAGACGTTGGTGTTCTACAGGAATAGAGCCCCAAATGGCATCAAAACTGGTTGGATCATGCATGAGTTTCGCTTGGAGACCCCACACATGCCCCCTAAGGAGGATTGGGTATTGTGTAGAGTGTTTCACAAGGGCAAAACAGAGAATAATAGTGCCAAACTAAGCCCACAATTCATGTATGAGGCCACACCTTCATCCCTAACTTTGGCTTCATCATCATCATCCCCACCAACAAACCAAACCAATTTGCATGTTATTGGGTATAACCAACTTCCCAATTTCTCATCATCATCATCACCAATGGCAATCCACCATAATCATCATCATCATCATCACCAAAACGGTTCCTCCTCTTTGATGAATCTCCTTCAATTTTCCACTAAGGAAAATAGCACCATTACTCAACTAAGTCCCAAAAGCAGCGGCGGTTGCGACGACGGCGGATATGGTGGGTTCATGTGGGACATGGACCTTGAGGAAACTAGCTTCCATGATGGTGGGGTTATTGCATCAAACTTGAATGACATGAGATTTGAGGTTGATAACAATACTATGGTTATGTTGTAG 777 0.4633 MEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPITREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTENNSAKLSPQFMYEATPSSLTLASSSSSPPTNQTNLHVIGYNQLPNFSSSSSPMAIHHNHHHHHHQNGSSSLMNLLQFSTKENSTITQLSPKSSGGCDDGGYGGFMWDMDLEETSFHDGGVIASNLNDMRFEVDNNTMVML 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120942g00004 258 ProSiteProfiles NAC domain profile. 1 114 IPR003441 GO:0003677|GO:0006355
Stsc120942g00004 258 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 193 - -
Stsc120942g00004 258 MobiDBLite consensus disorder prediction 168 187 - -
Stsc120942g00004 258 Pfam No apical meristem (NAM) protein 2 95 IPR003441 GO:0003677|GO:0006355
Stsc120942g00004 258 SUPERFAMILY NAC domain 2 114 IPR036093 GO:0003677|GO:0006355
Stsc120942g00004 258 Gene3D NAC domain 1 119 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120942g00004 Stsc-Chr120942 36876 43383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120942g00004 1 114 NAC Transcription Factor Family AT1G56010 62.810 6.52e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc120942g00004 NAM 7.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120942g00004 - - gmx:100783645 345.125