Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120941g00010 ATGGCGGTTGGCAAGAACAAAAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAGGCCGCTGATCCGTTTGCAAAGAAGGATTGGTATGACATTAAGGCCCCTTCCGTTTTCCAGGTCAAGAATGTTGGCAAGACCCTTGTCACTCGTACTCAGGGTACCAAGATTGCATCTGAAGGGCTCAAACATAGGGTGTTTGATGTCTCATTGGCTGATCTTCAAGGAGATGAGGACCACTCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTCACCAACTTCTGGGGAATGGACTTTACAACTGACAAGTTGAGGTCTTTGGTGCGANNNNNNNNNNCTCTCATTGAAGCCCATGTTGATGTCAAGACAACTGATAACTACACATTGAGGATGTTCTGCATTGGATTCACCAAGAGGAGATTTAACCAGATTAAGAGGACCTGTTATGCACAATCAAGCCAGATAAGACAGATCCGCAGGAAGATGAGAGAGATCATGACCAACCAGGCTACATCCTGTGATTTGAAGGAGTTGGTCCGCAAGTTCATTCCTGAGATGATTGGAAAGGAGATTGAGAAGGCAACATCCAGTATTTATCCCCTGCAGAATGTTTTCATTCGAAAAGTCAAGATCCTTAAAGCTCCTAAGTTTGATCTGGGAAAACTGATGGAGGTTCATGGTGATTACTCAGAAGATGTTGGAACTAAGGTAGACAGAGCTGCTGATGAAACAATGGCAGAGGCAACACCCACTGAAGTTGTTGGAGCTTGA 789 0.4423 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVTRTQGTKIASEGLKHRVFDVSLADLQGDEDHSFRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRXXXXLIEAHVDVKTTDNYTLRMFCIGFTKRRFNQIKRTCYAQSSQIRQIRRKMREIMTNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVDRAADETMAEATPTEVVGA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120941g00010 262 Hamap 40S ribosomal protein S1 [RPS3A]. 1 259 IPR027500 GO:0003735|GO:0005840|GO:0006412
Stsc120941g00010 262 MobiDBLite consensus disorder prediction 1 15 - -
Stsc120941g00010 262 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Stsc120941g00010 262 MobiDBLite consensus disorder prediction 1 20 - -
Stsc120941g00010 262 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Stsc120941g00010 262 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120941g00010 Stsc-Chr120941 79141 81134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120941g00010 1 262 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 83.270 1.83e-156 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120941g00010 K02984 - qsa:O6P43_021537 438.728