Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120941g00006 ATGGACACTCCCGACAGGGCCACCACCAACAACCTCAACCCCCCCAAATTTGAGGATTCACCAGTCTTCAACTTTCTGAATAGTCTATCTCCTATAAAGCCAGTTAAATCTGTTCACGTTACCCAGACCTTCAGTTCAATTAGCTTTTCATCCCCTCCATCAGTTTTCACATCACCCCATGTCAACCCTAACAAGGAATCCAGATTCCTGAGGAGGCATAACCTTTTGGACACATCAAAGCCAAAGGTTACATCTGAGGATGGAAATCAAATTGGTTCAGGTGAAGAGGCTCTTACAGATTCAACTCATGCATGTAATAACTCAAGGGAGTTAGACAAAAATTCTGGTAAAGGAACTTCCATAGGAGATGCCTCAATTGAGCCAGCCAATGCGCATGCAAAGTTCTCAATTGAGCTGCCACAGACCTTAAAATATGACTCTGGTAGCCCTGGATATGATCCTATGCTTTGTGATGATGAGGCAGCACCAGATGTTGTCGGCAGTCATGAAGCCTCTAAAAAGGATTCAGTGGAGGGCGAACTGCATCTTCACGGAATATGTCAGACTGAGCCGAAAATTGATATCACAGAGTGTGATTGGGATAATTTAATTAATAATGCATCTGATATGTTAATTTTCAGTTCACCAAACGTGTCAGAAGCTTTTAAGGATCTAATGAATAAACAGTTGGACCCTTCTGGACGGCTTAGCAATTTTATGACCGCGTTGCCAGAATCTTCAACCAACAACAGTCGTATAATGCACATAGTCAATCAAGTTGCTTCTGGATCAGGACCTGAAAATGAAGATCATCCTCCTGAATCAGGACTAGCTTCAGACACAGATCACACACAGGACAATACTGCCAATGTTGCTTTGGTAGCAAGCAATCCATGTGAGAAAATGGATGATGAGCATGTTTATGTTATACATCGTGGTATACGGAGGCGCTGTCTAGACTTTGAGATGGCCAGCGTTCGCAGAAATAACTCAGATGGCAATTCAAATGAAATTTCCAATGCAGCACAATCTGATGAGAGGAATACTGGTGGTGATTCAAGGAGGTGCTTTTTGCCGGGAATTGGTTTACACTTGAATGCGCTTGCAACATTGAAAGAACATGATGGCATGAAAAATGAGAAGTCTTTTTCTGGAAGACAACCTAATTTTCCTAGCTCCAGTTCTTCCTTGTTGCCGCAAGAACATCATCTATTATTGGGACCTGCATCCTCTGAAAGAGATTTGGAGCTACCAGAGAATGAGATTCAGCCTGTCGAAGATTGTAGTCAGTCATCTCACATGGCCAGTGAAGATTTCAATCAGAATAGCCCCAAAAAGAAAAGGCGAAAGGTGGAAATAGCTGGAGAAAGTGAGTCTTGCAAGCGGTGTAATTGTAAGAAATCAAAATGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGAGTCTACTGTATAGAACCTTGCTCTTGTCAAGATTGCTTCAATAAACCTATTCATGAAGATACTGTTCTTCAAACTCGCAAGCAGATTGAGTCTCGTAACCCACTTGCATTTGCTCCTAAAGTCATCAGAAGTGCTGATTCTGTTTCTGAAATTGCGGATGATCCAAACAAAACTCCAGCTTCGGCACGACACAAAAGAGGATGTAATTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGTTATCAGGGTGGTGTCGGTTGCTCCATTAGCTGTAGATGTGAAGGGTGCAAAAACGCATTCGGTAGAAAGGATGGTTCTGCAGGAATAGACGCTGAGGCAGAAGAAGAAACTGAAGCATTGGAAAAGGGTGAGGTTGAAAAGGCTTCACAGAAAACCGAAATTCAGAATATTGAAGACAATCAGAATTCTGCTCTTCCAACAACACCATTACGGCTTTCCAGACCATTGCTTCCATTGCCCTTTTCATCGAAAGGAAAGCCGCCTAGATCTTTCATTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAACCAAATATTCTTCGGCCTCAAGTTAAGTTTGAAAAACCTCATCAAACAGTGGCAGATGATGAAATGATGGATATTATCCAATGTGATAGCTCTCCTATGGCTTGCATAAAAACCTCTTCTCCAAATGGCAAAAGGATTTCCTCTCCTAATTGTGAACTTGGAACATCTCCTAATCGCAGAGGCGGCAGGAAGTTGATATTACAGTCCATCCCTTCCTTTCCTTCCCTCACCCCTGGCCCTCACCATTAG 2283 0.4122 MDTPDRATTNNLNPPKFEDSPVFNFLNSLSPIKPVKSVHVTQTFSSISFSSPPSVFTSPHVNPNKESRFLRRHNLLDTSKPKVTSEDGNQIGSGEEALTDSTHACNNSRELDKNSGKGTSIGDASIEPANAHAKFSIELPQTLKYDSGSPGYDPMLCDDEAAPDVVGSHEASKKDSVEGELHLHGICQTEPKIDITECDWDNLINNASDMLIFSSPNVSEAFKDLMNKQLDPSGRLSNFMTALPESSTNNSRIMHIVNQVASGSGPENEDHPPESGLASDTDHTQDNTANVALVASNPCEKMDDEHVYVIHRGIRRRCLDFEMASVRRNNSDGNSNEISNAAQSDERNTGGDSRRCFLPGIGLHLNALATLKEHDGMKNEKSFSGRQPNFPSSSSSLLPQEHHLLLGPASSERDLELPENEIQPVEDCSQSSHMASEDFNQNSPKKKRRKVEIAGESESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSADSVSEIADDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSAGIDAEAEEETEALEKGEVEKASQKTEIQNIEDNQNSALPTTPLRLSRPLLPLPFSSKGKPPRSFIAXXXXXXXXXXXXXXXXXXXXXKPNILRPQVKFEKPHQTVADDEMMDIIQCDSSPMACIKTSSPNGKRISSPNCELGTSPNRRGGRKLILQSIPSFPSLTPGPHH 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120941g00006 760 MobiDBLite consensus disorder prediction 605 634 - -
Stsc120941g00006 760 MobiDBLite consensus disorder prediction 1 20 - -
Stsc120941g00006 760 MobiDBLite consensus disorder prediction 382 400 - -
Stsc120941g00006 760 MobiDBLite consensus disorder prediction 617 632 - -
Stsc120941g00006 760 MobiDBLite consensus disorder prediction 81 121 - -
Stsc120941g00006 760 MobiDBLite consensus disorder prediction 257 288 - -
Stsc120941g00006 760 MobiDBLite consensus disorder prediction 372 450 - -
Stsc120941g00006 760 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 756 IPR044522 GO:0003700
Stsc120941g00006 760 MobiDBLite consensus disorder prediction 65 80 - -
Stsc120941g00006 760 MobiDBLite consensus disorder prediction 49 64 - -
Stsc120941g00006 760 MobiDBLite consensus disorder prediction 327 347 - -
Stsc120941g00006 760 SMART CXC_2 458 499 IPR033467 -
Stsc120941g00006 760 SMART CXC_2 544 585 IPR033467 -
Stsc120941g00006 760 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 461 496 IPR005172 -
Stsc120941g00006 760 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 547 582 IPR005172 -
Stsc120941g00006 760 Coils Coil 655 656 - -
Stsc120941g00006 760 MobiDBLite consensus disorder prediction 424 439 - -
Stsc120941g00006 760 ProSiteProfiles CRC domain profile. 459 584 IPR005172 -
Stsc120941g00006 760 Coils Coil 678 678 - -
Stsc120941g00006 760 MobiDBLite consensus disorder prediction 49 125 - -
Stsc120941g00006 760 Coils Coil 603 623 - -
Stsc120941g00006 760 MobiDBLite consensus disorder prediction 327 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120941g00006 Stsc-Chr120941 43482 48455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120941g00006 16 756 CPP Transcription Factor Family AT3G22780 43.455 1.56e-159 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc120941g00006 TCR 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120941g00006 - - adu:107467046 1230.31