Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120941g00004 ATGCATTCGGAAAGTGGGGATGTTGGGACACCAAAAGGGGCATTGGAAGAAGCTAAGGCGTTGAATTCAAAGATGAAGCGCAGTGAGAGCCTATGCAGCAAAGATATGGTGCTTAGAGCTGATAAGGTCGATCTCAAGAGTTTGGATACTGAGCTAGAAAAACACCTCAAAAGGGTTTTGTCTAGACATATTGAGGCCAAAAGGCCTAAAGAAGAGTGGGAGATAGATTTGGCGAAACTGGATTTGCAATATGTTGTGGCTAATGGAGCCTATGGCACTGTTTATAAGGGCATCTATGATGGCCAACATGTTGCAGTGAAAGTGTTGGATTGGGGTGAGGATGGTGGTGCTTCTGCTATTTCCTTAAGAGCATCATTCAAGCAGGAGGTTACTGTCTGGCAAAAACTTGATCATCCAAATGTTACAAAATTTGTTGGAGCTTCAATGGGGACATCAAACCTCAGGATTCCCAGAGAAGCTGGAGGCCAAGATTCTCTTCCTATCCGAGCATGTTGTGTAGTTGTGGAGTTCATTCCTGGTGGAACTTTAAAAAATTACTTCCTTAGTTATCTTCATTCAAAAAAGATTGTGCACCGGGATGTTAAAACAGACAATATGTTGCTTGAGATGAATCAAAATTTGAAAATAGCTGATTTTGGAGTTGCCCGTGTTGAGGCTTTGAATCCATGTGAGATGACTGGTGAAACTGGAACAATTGGATACATGGCACCAGAGGTTTTAGAAGGCAAGCCATACAATAGAAGATGTGATGTGTATAGCTTTGGCATTTGCTTGTGGGAAATATATTGTTGCCATATGCCATATTCAACACGAAGCTTTGTTGATGTCTCATCAGCAGTCACCCGTCAGAATTTGCGACCGGATATTCCTCGATGCTGCCCGAGTGCATTGGCGAGCATCATGCGAAAATGCTGGGATGGAAACCCGAACAAGCGGCCAGAAATGCAGGATGTGGTGCAAATGCTGGAAACAATTGATACCAGCAAAGGAGGAGGGATGCTGCCGGATGATCAGGCTCCATTTTGTTTCTGTTTTGGAACAGTCCGTGGTCCTTAA 1077 0.4373 MHSESGDVGTPKGALEEAKALNSKMKRSESLCSKDMVLRADKVDLKSLDTELEKHLKRVLSRHIEAKRPKEEWEIDLAKLDLQYVVANGAYGTVYKGIYDGQHVAVKVLDWGEDGGASAISLRASFKQEVTVWQKLDHPNVTKFVGASMGTSNLRIPREAGGQDSLPIRACCVVVEFIPGGTLKNYFLSYLHSKKIVHRDVKTDNMLLEMNQNLKIADFGVARVEALNPCEMTGETGTIGYMAPEVLEGKPYNRRCDVYSFGICLWEIYCCHMPYSTRSFVDVSSAVTRQNLRPDIPRCCPSALASIMRKCWDGNPNKRPEMQDVVQMLETIDTSKGGGMLPDDQAPFCFCFGTVRGP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120941g00004 358 ProSiteProfiles Protein kinase domain profile. 80 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120941g00004 358 FunFam Kinase suppressor of Ras 1 69 160 - -
Stsc120941g00004 358 MobiDBLite consensus disorder prediction 1 23 - -
Stsc120941g00004 358 Gene3D Transferase(Phosphotransferase) domain 1 186 339 - -
Stsc120941g00004 358 SUPERFAMILY Protein kinase-like (PK-like) 67 332 IPR011009 -
Stsc120941g00004 358 Pfam Protein kinase domain 88 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120941g00004 358 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 57 334 - -
Stsc120941g00004 358 CDD STKc_MAP3K-like 89 329 - -
Stsc120941g00004 358 Gene3D Phosphorylase Kinase; domain 1 69 160 - -
Stsc120941g00004 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Stsc120941g00004 358 SMART serkin_6 80 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120941g00004 Stsc-Chr120941 23217 25365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120941g00004 34 358 MAP Kinase Kinase Kinase AT3G22750 69.318 0.0 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc120941g00004 Pkinase 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120941g00004 - - gmx:100803917 551.977