Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120940g00015 ATGGAGGAAGAAGAGCACGAGGTATACGGAGGAGAGATCCCAGACGTTGCAGAGATGGAAGCTGACGTCGACATGTCCGCTCCCGACGACGACCCCGCCGTCAAGGAGCTGGACGAGATGAAGCGCCGCCTTAAGGAGATGGAAGAAGAAGCTGCAGCTCTTCGCGAGATGCAAGCTAAGGTCGAAAAGGAGATTGGCTCTGCTCAAGATCCTGCCACTGCAGCCGCTTCTCTGGCAAACAAGGAGGAGGCAGATTCTCGATCGGTATTTGTAGGCAATGTTGATTATGCATGCACACCAGAGGAGGTGCAGCAACACTTTCAATCATGTGGTACAGTGAACAGGGTAACCATCCTGACTGACAAGTTCGGCCATCCTAAAGGTTTTGCTTACGTGGAGTTTGTTGAAGTTGAAGCTGTTCAAGAAGCTCTTGTCTTGAATGAATCGGAGTTACATGGGCGTCAATTGAAGGTCTTGCCTAAGAGGACCAATGTTCCTGGAATGAAACAGTATCGCCCTAGGCGCTATAATCCTTACATGTCATTTGGCTTTAGGAGGCCATATCCTCCACCTTACTTTTACTCCCCTTATGGATACGGGAAGGTTCCTAGGTTTAGAAGGTCAACTCGTTACATGCCATACTACTAG 648 0.4938 MEEEEHEVYGGEIPDVAEMEADVDMSAPDDDPAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIGSAQDPATAAASLANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMSFGFRRPYPPPYFYSPYGYGKVPRFRRSTRYMPYY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120940g00015 215 Gene3D - 29 159 IPR012677 -
Stsc120940g00015 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Stsc120940g00015 215 CDD RRM_II_PABPs 88 159 - -
Stsc120940g00015 215 SUPERFAMILY RNA-binding domain, RBD 79 184 IPR035979 GO:0003676
Stsc120940g00015 215 Coils Coil 30 64 - -
Stsc120940g00015 215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 175 - -
Stsc120940g00015 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 163 IPR000504 GO:0003723
Stsc120940g00015 215 SMART rrm1_1 88 159 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120940g00015 Stsc-Chr120940 74671 79004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120940g00015 84 158 Eukaryotic Initiation Factors Gene Family AT2G36660 34.211 5.50e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120940g00015 K14396 - gmx:100789721 350.132