Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120940g00004 ATGAAGAGACTTAGCAGCTCCGACGATTCTTTGGGCGCTCTCATCACAATTTGTCCATCATCAACAACAGAAGAACACAGTCCTAGGAACAAACAGCAGGTGTACGGAAGGGAGTTCCAAACGATGTTGGACGGACTGGACGAAGAAGGTTGCATCGAAGAATCAGGGCACCACGGCGAGAAGAAACGCCGCTTAAGCGTGGATCAAGTGAAGGCTTTGGAGAAGAACTTCGAGGTTGAGAACAAGCTGGAGCCAGACAGAAAGGTGAAGCTGGCACAAGAACTGGGGTTGCAGCCAAGACAAGTTGCCGTGTGGTTCCAAAACCGCAGAGCCAGGTGGAAAACCAAGCAGTTGGAAAGAGACTACGGCGTTCTCAAAGCCAATTACGAATCTCTTAAACTCAACTTCGAAAAGCTTCAACAAGACAACCAAGCCTTGCATAAAGAGATTAAGGGATTGAAATCAAGGATGCAAGAGGAACGCACCGAAAGCGATGCTTCCGTGAAGAAGGAAGAAGTAGAGATGATAACAACGCTGCAGGAGTCGGAGGAGAATATCAAGTGTAACCCTTGTTCTCTTGAAACCATTGCTGTTGAGGGTGGTGAGGGTGTGGGAGGAGGAGGAACAGCGTCGATATCGCTGTTCCCGTGTGGTGGGGACTTGAAAGACGGTTCTTCAGATAGCGATTCAAGCGCGATCTTGAACGAAGAGAATAACAACAGCAGCTGTAGCCCCATGATGAGTAGTGGGGTTCTGCAAAGTTCCAACCTTTTGATGTGTGAGCATGATGAGTCGCCGTCGTCCATGAGCTGCTTGCAGTTCCAGAAGGCGTACCAGGCCACCACAACACAGTACGTGAAGATGGAGGAGCACAACTTCTTCAGTGCAGACGAGGCCTGCAATTTCTTCTCCGATGAGCAAGCACCAACCCTTCAGTGGTACTGTTCGGAAGAGTGGAGTTGA 963 0.4953 MKRLSSSDDSLGALITICPSSTTEEHSPRNKQQVYGREFQTMLDGLDEEGCIEESGHHGEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYESLKLNFEKLQQDNQALHKEIKGLKSRMQEERTESDASVKKEEVEMITTLQESEENIKCNPCSLETIAVEGGEGVGGGGTASISLFPCGGDLKDGSSDSDSSAILNEENNNSSCSPMMSSGVLQSSNLLMCEHDESPSSMSCLQFQKAYQATTTQYVKMEEHNFFSADEACNFFSDEQAPTLQWYCSEEWS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120940g00004 320 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 314 IPR045224 GO:0003700
Stsc120940g00004 320 Pfam Homeodomain 61 114 IPR001356 GO:0003677
Stsc120940g00004 320 Pfam Homeobox associated leucine zipper 116 158 IPR003106 GO:0006355|GO:0043565
Stsc120940g00004 320 FunFam Homeobox-leucine zipper protein HAT5 54 118 - -
Stsc120940g00004 320 Gene3D - 55 123 - -
Stsc120940g00004 320 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Stsc120940g00004 320 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Stsc120940g00004 320 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Stsc120940g00004 320 MobiDBLite consensus disorder prediction 226 246 - -
Stsc120940g00004 320 CDD homeodomain 61 117 IPR001356 GO:0003677
Stsc120940g00004 320 SMART HOX_1 59 120 IPR001356 GO:0003677
Stsc120940g00004 320 SUPERFAMILY Homeodomain-like 48 118 IPR009057 -
Stsc120940g00004 320 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Stsc120940g00004 320 Coils Coil 115 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120940g00004 Stsc-Chr120940 16518 18794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120940g00004 1 320 Homeobox Transcription Factor Family AT4G40060 45.562 2.16e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc120940g00004 Homeodomain 4.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120940g00004 K09338 - gmx:100796213 381.719