Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120940g00003 ATGGCTTTTCTTCCCAGAAAACTGCAACACCACAATGAACATATATCACATAGCCCAGGCCCAGGCCCAGTCCTGGCACCTTCTCCTTCCCCCATTCAACCATCACTCTCACTCCCTTTCCCTATCCCGATCTCACCCAAGTTGCCTTTCCCTTTAATCCCTATCCACGATGAAGGCATTCATATGAATGTTCTTCGACTTGGCATGATCCTCATGGCCAGCACCGTTGGAATCATGATGCTTCTCTGTACAGTCTCCCTGATCCGAAGGAGCTGCTGTTCCCGGAGGAGACGAAACGCGCCCATATTGTTCCATATTAATGGAGACTCTGGTGTTTTAGGTTCGGATTTCGATGACGATGAGGGAGCCTTGGTTCATCACCCTGTATGGTTCATCCGCACGGTGGGTCTGCAGCAGTCGGTTATAGATTCCATGACAGTGTTTGTTTACAGAAAAGGCGAGAGGCTAATTGACGGTACAGAGTGCTCTGTTTGCCTCGCTGAGTTTCAAGAAGACGACACACTCAGGCTGTTACCCAAGTGCAGTCACGCCTTTCACGTCCCTTGCATTGACACGTGGCTTAGATCTCACCAGAATTGCCCTCTCTGCCGTGCTCCCGTTCTTCATGAGTCCAGTGCCGCTCCCGGAGCTACTGCTACTGCTACTAGTACTGAGATGATAGTTACCGAGGCTGATTCAACCGGTTCTGCTGAGAATCAAGAGATGGAGAATTTGGATGATCGCGAGAGCAGTTCAGTGAGGATTATTGCAGATGAGGATGATAGGGGTGAAGATGGAGAAAATATGAATATGCAAAGGGATGCGGAGGATATTACAGAACCAGTGAGGAGGTCAGTTTCCATGGATTCATCCTCCATTATTTGTGATTTGAATTCAAGTAAGGGTAGTGGTGGAAGTTCAAGTTCAAGAATATACAAACTGGCTTCAATAGCATTTCAGAAGAGGCCTAGGAAATGCTCCTCTTCCACACACACTAGGAGCCACAGTTCAAGTCTTCCTTTGTAG 1026 0.4805 MAFLPRKLQHHNEHISHSPGPGPVLAPSPSPIQPSLSLPFPIPISPKLPFPLIPIHDEGIHMNVLRLGMILMASTVGIMMLLCTVSLIRRSCCSRRRRNAPILFHINGDSGVLGSDFDDDEGALVHHPVWFIRTVGLQQSVIDSMTVFVYRKGERLIDGTECSVCLAEFQEDDTLRLLPKCSHAFHVPCIDTWLRSHQNCPLCRAPVLHESSAAPGATATATSTEMIVTEADSTGSAENQEMENLDDRESSSVRIIADEDDRGEDGENMNMQRDAEDITEPVRRSVSMDSSSIICDLNSSKGSGGSSSSRIYKLASIAFQKRPRKCSSSTHTRSHSSSLPL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120940g00003 341 Pfam Ring finger domain 161 204 IPR001841 -
Stsc120940g00003 341 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Stsc120940g00003 341 SMART FANCL_C_2 158 212 - -
Stsc120940g00003 341 CDD RING-H2_EL5-like 161 204 - -
Stsc120940g00003 341 SUPERFAMILY RING/U-box 149 210 - -
Stsc120940g00003 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 213 IPR013083 -
Stsc120940g00003 341 MobiDBLite consensus disorder prediction 320 341 - -
Stsc120940g00003 341 SMART ring_2 162 203 IPR001841 -
Stsc120940g00003 341 MobiDBLite consensus disorder prediction 241 283 - -
Stsc120940g00003 341 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 69 210 IPR044675 -
Stsc120940g00003 341 MobiDBLite consensus disorder prediction 322 341 - -
Stsc120940g00003 341 MobiDBLite consensus disorder prediction 230 285 - -
Stsc120940g00003 341 FunFam E3 ubiquitin-protein ligase ATL6 130 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120940g00003 Stsc-Chr120940 7330 9785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120940g00003 127 304 C3H Transcription Factor Family AT5G10380 44.385 4.18e-40 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120940g00003 - - adu:107481823 417.542