Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120940g00002 ATGAAGCTCCTACGATTACTGCGCCGCCTCATCCATTCAGAGGAAGCTAACAATGGGGATTCACAAAGTGAGGAAGAAGAGAGAGTGTGCTCATGGTTATACACTTTGGCTCATACTCATAAATACATGGCCTTCGAGTACGTTGCTTCCACAGAAAGAGGTCTAAGTTTCACTGAAGCAGAGAGGAGGCTAAAGGAGAATGGGCCAAATGTTCCACTTGAGTATTCTTTTCCAAGGTGGTGGCATCTTTTGTGGAACTCTCTCTTCCATCCTTTTAACATGATCCTCATTGTTTTATCTGCAATGTCCTTCGTTGCTTGCGACAATCCTAATGGATGCATCATGCTCATATTGGTTTTCATCAGTGTTGCCCTCCGTTTCTGTCAGGAACACAACAGCTCAAAAGCAGCCGTGAAACTTTCTGAATTGGTAAGGTGCCCAGTAAAAGTGCAAAGATGTGCAGGTAGAGTTGTGCAGACAGAGTTAATAGTTCAAGTTGATCAGAGGGATATAGTTCCTGGCGACATTGTTATTTTTGAACCTGGTGATCTATTTCCTGGAGATGTTAGGTTGTTATCTTCAAAGCATCTTGTTGTCAGCCAGGCCTCACTCACTGGGGAATCTTGGACAACTGAGAAAACTGCTGATATCAGAGAGGATCAAAGCACTCCTTTATTAGATTTAAAGAACATCTGCTTCGCCGGCACAAGTGTGGTTTCAGGTACTGGAACAGGACTGGTTGTATCTACAGGATCCAATACTTACATGAGCAGCATGTTTTCAAAATTTGGGAAGAGAAAGTCACCAGATGAGTTTGAAAAGGGTCTCAAGTGGATATTTTACTTGCTTATCTCAGTTATGGTAGTGGTAGTTACAATTATGTTCTTGACAGATTACATTACATCACTGAATTTGAGCAACAGCATTCTTTTTGCAATCTCAGTTGCATCTGCCCTCAATCCTCAGATGCTTCCCCTCATTGTGAACACATGTCTAGCCAAAGGAGCACTTGCTATGGCCAAAGACAGGTGTATAGTCAAAAGTTTGACTGCGATTCGCGACATGGGATCCATGGACATTCTATGCATTGACAAGACAGGCACACTAACAATGAATCGTGCAATTATGGTTAATCATGTTGATGCCAAAGGGATGCCCCAAGAACAAGTTCTACGCTTTGCATTTCTCAATTCTTACTTTAAGATTGAGCAGAAGTATCCCTTGGATGATGCAATTCTTGCATACGTATATACAAATGGATTCAAGTTTCAGCCATCCAAGTGGAGCAAGCTAGATGAGATTCCTTTCGACTTCATAAGAAGAAGAGTATCTGTTATCTTAGAAACAAATGAGGGAAACTCACAGTTCTCTGGCAGGTTCATGGTAACAAAAGGAGCAATATTGGAAGTCATGCGAGTTTGTTCTTACATTGCAAATTTTGACAAAGAAGAAGGAATCTCAATCTTCTCTTCAGATGACTATAAGAGAATTTTAAATCTTTCAGAAGAACTGAGCAATGAGGGACTAAGGGTTATAGCAGTAGCTATGAGGAAACTTGAAGAGGAAACAAGTAATTGCATAAAGACAAGTGATGAAGGAGACATGATATTCCTTGGCCTAATAACATTTTTTGACCCACCAAAGGACTCAGCGAAGGAAGCTTTGTGGCGTTTGGCAGAAAAAGGAGTGAAGGCAAAGGTTTTAACAGGGCCAGAGCTAGAGCAACTTGACCAAGAAACTTTCCATGAGGCGGTTCAGCGCGCCACGGTGCTAGCGCGCCTCACGCCAACTCAGAAACTCAGAGTGGTTCAGTCCTTGCAGACAATTGGAAACCATGTGGTTGGATTCTTGGGAGACGGTGTGAATGACTCTCTAGCCCTTGATGCTGCCAATGTTAGCATTTCAGTGGACTCAGGTGTAGCCATAGCCAAAGACATGGCAGACATCATCTTACTTGAGAAGGATCTCAATGTGCTGGTTGCAGGAGTGGAGCATGGTAGACTCACCTTTGGCAACACAATGAAGTATGTGAAGATGTCAGTTATTGCAAACTTGGGAGGTGTGATTTCACTCCTTATAGCAATCTTGTTCCTCAAGTATGAGCCCTTAACCTCTAGACAGCTCCTCACACAGAACTTGCTCTACAGTGTGGGACAAATCGCGATCCCTTGGGACAAAATGGATGAAGACTATGTGAGGAGTCCTCAGAAATGGTCAGAGAAAGGGTTGCCAATGTTCTTATTGTGGAATGGCCCAGTTTGCACATTGTGTGATGTGGCAGCACTCTTGTTCATTTGGTTCTATTACAATGTCGGAACAGATTTGGATGAGAAGTTCTTCCATTCAGCATGGTTCATTGAGGGCCTACTCATGCAGACTCTGATCATTCACTTAATCAGAACTGAGAAAATTCCTTTCATACAGGACATTGCTTCTTGGCCTGTCATGTGCTCCACACTTGTCATATCTGCAATTGGAATTGGACTTCCATTCACACCTATTGGAAGATTCATGCAATTCACAATTCTACCCCCCTCCTATTTCGGATTTTTGCTCATTCTTTTTCTTGGATACTTTATAGTTGGCCAGGTCGTTAAGAGACTTTACATATTGGTTTATAAGAGATGGCTTTGA 2634 0.4244 MKLLRLLRRLIHSEEANNGDSQSEEEERVCSWLYTLAHTHKYMAFEYVASTERGLSFTEAERRLKENGPNVPLEYSFPRWWHLLWNSLFHPFNMILIVLSAMSFVACDNPNGCIMLILVFISVALRFCQEHNSSKAAVKLSELVRCPVKVQRCAGRVVQTELIVQVDQRDIVPGDIVIFEPGDLFPGDVRLLSSKHLVVSQASLTGESWTTEKTADIREDQSTPLLDLKNICFAGTSVVSGTGTGLVVSTGSNTYMSSMFSKFGKRKSPDEFEKGLKWIFYLLISVMVVVVTIMFLTDYITSLNLSNSILFAISVASALNPQMLPLIVNTCLAKGALAMAKDRCIVKSLTAIRDMGSMDILCIDKTGTLTMNRAIMVNHVDAKGMPQEQVLRFAFLNSYFKIEQKYPLDDAILAYVYTNGFKFQPSKWSKLDEIPFDFIRRRVSVILETNEGNSQFSGRFMVTKGAILEVMRVCSYIANFDKEEGISIFSSDDYKRILNLSEELSNEGLRVIAVAMRKLEEETSNCIKTSDEGDMIFLGLITFFDPPKDSAKEALWRLAEKGVKAKVLTGPELEQLDQETFHEAVQRATVLARLTPTQKLRVVQSLQTIGNHVVGFLGDGVNDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGGVISLLIAILFLKYEPLTSRQLLTQNLLYSVGQIAIPWDKMDEDYVRSPQKWSEKGLPMFLLWNGPVCTLCDVAALLFIWFYYNVGTDLDEKFFHSAWFIEGLLMQTLIIHLIRTEKIPFIQDIASWPVMCSTLVISAIGIGLPFTPIGRFMQFTILPPSYFGFLLILFLGYFIVGQVVKRLYILVYKRWL 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120940g00002 877 PRINTS Magnesium-transporting ATPase signature 675 690 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc120940g00002 877 PRINTS Magnesium-transporting ATPase signature 780 801 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc120940g00002 877 PRINTS Magnesium-transporting ATPase signature 275 291 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc120940g00002 877 PRINTS Magnesium-transporting ATPase signature 725 738 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc120940g00002 877 PRINTS Magnesium-transporting ATPase signature 830 851 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc120940g00002 877 PRINTS Magnesium-transporting ATPase signature 693 704 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc120940g00002 877 PRINTS Magnesium-transporting ATPase signature 396 409 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc120940g00002 877 PRINTS Magnesium-transporting ATPase signature 745 761 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc120940g00002 877 PANTHER CATION TRANSPORTING ATPASE 47 867 - -
Stsc120940g00002 877 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 368 550 IPR023299 GO:0000166
Stsc120940g00002 877 ProSitePatterns E1-E2 ATPases phosphorylation site. 364 370 IPR018303 -
Stsc120940g00002 877 Gene3D - 359 571 IPR023214 -
Stsc120940g00002 877 SFLD C1.7: P-type atpase like 344 667 - -
Stsc120940g00002 877 Gene3D - 112 358 - -
Stsc120940g00002 877 SUPERFAMILY Calcium ATPase, transmembrane domain M 50 874 IPR023298 -
Stsc120940g00002 877 Pfam E1-E2 ATPase 156 341 - -
Stsc120940g00002 877 SUPERFAMILY Calcium ATPase, transduction domain A 156 260 IPR008250 -
Stsc120940g00002 877 Gene3D - 655 825 - -
Stsc120940g00002 877 Gene3D - 146 250 - -
Stsc120940g00002 877 NCBIfam magnesium-translocating P-type ATPase 35 876 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc120940g00002 877 SFLD p-type atpase 344 667 IPR044492 -
Stsc120940g00002 877 NCBIfam HAD-IC family P-type ATPase 464 697 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc120940g00002 877 NCBIfam HAD-IC family P-type ATPase 115 410 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc120940g00002 877 Gene3D - 574 654 IPR023214 -
Stsc120940g00002 877 SMART Cation_ATPase_N_a_2 38 108 IPR004014 -
Stsc120940g00002 877 SUPERFAMILY HAD-like 534 665 IPR036412 -
Stsc120940g00002 877 Pfam haloacid dehalogenase-like hydrolase 358 631 - -
Stsc120940g00002 877 Pfam Cation transporter/ATPase, N-terminus 49 103 IPR004014 -
Stsc120940g00002 877 Gene3D - 374 544 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120940g00002 Stsc-Chr120940 3474 6647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120940g00002 53 772 Primary Pumps ATPases(2) AT1G10130 26.328 8.92e-59 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120940g00002 K01531 - gmx:100795153 1379