Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120936g00017 ATGGATGGTTTTGTATATGAACATGGTCCATTTAATTTTGAGAAACCAACCATTAAAGGAGCATTGCCTAAGTTGACACTCAACCAATATAGTTGGTCAAAGGTTTCAAATATCATATACTTGGACTCTCCTGCTGGAGCTGGATTCTCTTACTCAAAGAATTTATCAGATTATGTCACTGGGGATTTAAGAACAGCCAATGATACACACGCTTTTCTCCTTAAGTGGTTCGAACAGTACCCTGAGTTCCAACAGAACCAATTCTTCATAGCTGGAGAGTCATATGCTGGGATTTATATTCCTACTCTTGCTGATGCAATAGTCAGAGGAATTGATGCATGTGTGATTGCAGGAAATGATGCATGTGGGAAGCCCCTAATAAATTTCAAGGGTTACATGATAGGAAATGGTGTTACCGATAAAATATTTGATGGCAATGCTCTTATTCCATTCACACATGGGATGGGCCTTATTTCTGATGAAATATTCCAGGAGAGCGAAAAAGTGTGCCAAGGAAACTACTATGATCCTCAAACTAATGATTGCAAAGATCAGGTTGCAAAAGTAAACAAGATTATTGCTGGGTTAAACATATATGACATTTTGGAACCATGTTATCATAGCAATGGGACATCATCATCATCATCTAATAATAGTAGGTTGCCACAAAGCTTCAAGGAATTGGGTGTAACAGATAGACCTCTGCCTGTAAGGAAGAGAATGTTTGGTCGTGCATGGCCTTACAGAGCTATTGTCAATGATGGACTTGTACCAACTTGGCCTCAACTCAATAAACTCATGCAGAAAGACAGTGACATTGCAGTCGATGTTCCATGCACTGATGTTGAAGTTGCTACAGAATGGTTGAACAATGATGAAGTTAGAAAAGCACTTCACACCGCAGAGAAAAGTGTGGTTAGCAAGTGGGAGATATGCACAGACCAAATTACTTACTATCATCCGACTGGAAGCATGATCAAGTATCACAAGAAGCTAACTTCTCAAGGCTATCGAGCACTTATATTCAGTGGTGATCATGACATGTGTGTTCCATATACTGGAAGCCAAGCATGGACAAGTTCGTTGGGATATAAGATCGTAGATGAATGGAGGCCTTGGTTAGTTGATGGCCAAGTTGCTGGGTTTACACAAGGATATGAAAAAAATCTTACATTTTTAACCATAAAGGGAGCTGGCCACACTGTTCCAGAATATAAGCCCAAAGAGTCATTGTACTTCTACAAAAGTTTTCTAGATGGAAAACCTGTATAA 1272 0.3939 MDGFVYEHGPFNFEKPTIKGALPKLTLNQYSWSKVSNIIYLDSPAGAGFSYSKNLSDYVTGDLRTANDTHAFLLKWFEQYPEFQQNQFFIAGESYAGIYIPTLADAIVRGIDACVIAGNDACGKPLINFKGYMIGNGVTDKIFDGNALIPFTHGMGLISDEIFQESEKVCQGNYYDPQTNDCKDQVAKVNKIIAGLNIYDILEPCYHSNGTSSSSSNNSRLPQSFKELGVTDRPLPVRKRMFGRAWPYRAIVNDGLVPTWPQLNKLMQKDSDIAVDVPCTDVEVATEWLNNDEVRKALHTAEKSVVSKWEICTDQITYYHPTGSMIKYHKKLTSQGYRALIFSGDHDMCVPYTGSQAWTSSLGYKIVDEWRPWLVDGQVAGFTQGYEKNLTFLTIKGAGHTVPEYKPKESLYFYKSFLDGKPV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120936g00017 423 FunFam Carboxypeptidase 1 228 - -
Stsc120936g00017 423 Pfam Serine carboxypeptidase 1 420 IPR001563 GO:0004185|GO:0006508
Stsc120936g00017 423 ProSitePatterns Serine carboxypeptidases, histidine active site. 390 407 IPR033124 GO:0004185
Stsc120936g00017 423 ProSitePatterns Serine carboxypeptidases, serine active site. 90 97 IPR018202 GO:0004185
Stsc120936g00017 423 PRINTS Carboxypeptidase C serine protease (S10) family signature 76 101 IPR001563 GO:0004185|GO:0006508
Stsc120936g00017 423 PRINTS Carboxypeptidase C serine protease (S10) family signature 28 40 IPR001563 GO:0004185|GO:0006508
Stsc120936g00017 423 PRINTS Carboxypeptidase C serine protease (S10) family signature 41 51 IPR001563 GO:0004185|GO:0006508
Stsc120936g00017 423 PRINTS Carboxypeptidase C serine protease (S10) family signature 390 403 IPR001563 GO:0004185|GO:0006508
Stsc120936g00017 423 SUPERFAMILY alpha/beta-Hydrolases 1 422 IPR029058 -
Stsc120936g00017 423 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 3 407 IPR001563 GO:0004185|GO:0006508
Stsc120936g00017 423 FunFam Carboxypeptidase 325 420 - -
Stsc120936g00017 423 Gene3D alpha/beta hydrolase 1 423 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120936g00017 Stsc-Chr120936 98119 102963 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120936g00017 282 423 Calmodulin-binding Proteins AT2G22960 43.662 1.45e-38 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120936g00017 K16296 - qsu:112015389 613.224