Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120936g00016 ATGGGTGGTGCCAATAGAATGTTCTCCTTAGTCTTATTTCATGTTTTCTTGCAAATTAATGTTCTCACTCAATCAGCACCAACAGAATCTCTTGTGAATCAAGTTCCAGGTTTTGATGGAAAGCTACCTTCAAAACACTATGCTGGGTATGTGACGGTAGATGAAGATCATGGAAGGAACCTGTATTATTATTTTGTTGAATCAGAGAGTGAACCGAACAAGGACCCGGTGGTTCTATGGCTTAATGGTGGACCCGGTTGTTCTAGCTTAGATGGTTTTGTATATGAGCATGGTCCATTTAATTTTGAGAAACCAACCAGTAAAGGAGCCTTGGCTAAGTTGACACTCAACCATTATAGTTGGTCAAAGGTTTCAAATATCATATACTTGGACTCTCCTGCTGGAGTTGGGTTCTCTTACTCAAAGAATGAATCAGATTACATCACTGGGGATTTAAGAACAGCCAATGATGCACACGCTTTTCTCCTTAAGTGGTTCGAACTGTACCCTGAGTTCCAACGGAACCCATTGTTCTTAGCTGGAGAGTCATATGCTGGGATTTATATTCCTACTCTTGCTCAAGCAATAGTGAGAGGAATTGATGCATGTGTGAAGCCCATACTAAATTTCAAGGGTTACTTGATAGGAAATGGTGTTACTGATAAAAAATTTGATGGCAATGCTCTTATTCCATTCACACATAGGATGGGTCTTATTTCTGATGAAATATTCCAGGAGAGTAAAAAAGTTTGCCAAGGAAACTACTATGATCCTCAAACTAAGGATTGCAACGCACAGGTTACAAAAGTAAACAAGATTATTGCTGCGTTAAACATATATGACATTTTGGAACCATGTTATCATAGCAATGGGACATCATCATCATCATCTAGTAATAGTAGGCTGCCACAAAGCTTCAAGGAATTGGGTGTAACAGATAGACCTTTGCCTGTAAGGAAGAGAATGTTTGGTCGTGCATGGCCTTATAGAGCTATTGTCAATGATGGAATTGTACCAACTTGGCCACAACTCAATGAACTCATAAAGAATGACAGTGACATTGCAGTCGATGTTCCATGCACTGATGATGAAGTTGCTACTGAATGGTTGAACAATGATGAAGTTAGAAAGGCAATTCACACCGTAAAGAAAAGTGTGATTAGCGAGTGGTTCTTATGCACAGCCCAACTTACTTACTCTTTTAATGCTGGAAGCATGATCAAGTATCACAAAGAGTTAACTTCCCGAGGCTATCGAGCACTTATATATAGTGGTGATCATGACATGTGTGTTCCATATACTGGAAGCCAAGCATGGACAAGTTCATTGGGATATAAGATTGTAGATGAATGGAGGCCTTGGTTTAGTGATGGTCAAGTTGCTGGGTTTACACAAGGATATGAAAAAAATCATACATTTTTAACCATAAAGGGAGCCGGCCACACTGTTCCAGAATATAAGCCTAAAGAGTCACTGTACTTCTACAAACGTTTTCTATATGGAAAACCTATATAA 1515 0.3921 MGGANRMFSLVLFHVFLQINVLTQSAPTESLVNQVPGFDGKLPSKHYAGYVTVDEDHGRNLYYYFVESESEPNKDPVVLWLNGGPGCSSLDGFVYEHGPFNFEKPTSKGALAKLTLNHYSWSKVSNIIYLDSPAGVGFSYSKNESDYITGDLRTANDAHAFLLKWFELYPEFQRNPLFLAGESYAGIYIPTLAQAIVRGIDACVKPILNFKGYLIGNGVTDKKFDGNALIPFTHRMGLISDEIFQESKKVCQGNYYDPQTKDCNAQVTKVNKIIAALNIYDILEPCYHSNGTSSSSSSNSRLPQSFKELGVTDRPLPVRKRMFGRAWPYRAIVNDGIVPTWPQLNELIKNDSDIAVDVPCTDDEVATEWLNNDEVRKAIHTVKKSVISEWFLCTAQLTYSFNAGSMIKYHKELTSRGYRALIYSGDHDMCVPYTGSQAWTSSLGYKIVDEWRPWFSDGQVAGFTQGYEKNHTFLTIKGAGHTVPEYKPKESLYFYKRFLYGKPI 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120936g00016 504 FunFam Carboxypeptidase 406 501 - -
Stsc120936g00016 504 Pfam Serine carboxypeptidase 36 499 IPR001563 GO:0004185|GO:0006508
Stsc120936g00016 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 471 484 IPR001563 GO:0004185|GO:0006508
Stsc120936g00016 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Stsc120936g00016 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Stsc120936g00016 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Stsc120936g00016 504 Gene3D alpha/beta hydrolase 24 318 IPR029058 -
Stsc120936g00016 504 Gene3D - 356 504 - -
Stsc120936g00016 504 FunFam Carboxypeptidase 25 309 - -
Stsc120936g00016 504 ProSitePatterns Serine carboxypeptidases, serine active site. 179 186 IPR018202 GO:0004185
Stsc120936g00016 504 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 488 IPR001563 GO:0004185|GO:0006508
Stsc120936g00016 504 FunFam Carboxypeptidase 359 503 - -
Stsc120936g00016 504 SUPERFAMILY alpha/beta-Hydrolases 32 503 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120936g00016 Stsc-Chr120936 89241 95150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120936g00016 365 504 Calmodulin-binding Proteins AT2G22960 44.286 2.79e-38 136