Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120936g00015 ATGTTTCCGGCGGCGTTGAGTGTTGTCACGCCCTCTAAGCTCTCTGCTTTCATCATCCCTTCTTCACATTCACAGCACCTTCTTCACCCAAACAACGCAACAAGACTCTCAATCTTTTCAAAACCCAGCTCCTCCAGACTCTCTCTCCTCCTTCCCAGGCTCAGTTCTAGTAACGGTCCTGATGCAACCTCTTCATCCCCTTCAGGTATTGATGCAGTAGAGAGTACATCTTCTGGTCTTGGTGATGGTTATGTGGCCTTATTTGTTCGTATGTTGGGCTTAGATCATGATCCTCTGGATAGAGAGCAAGCTATAGTTGCTCTCTGGAAATATTCACTTGGTGGAAAGAAGTGTATTGGCACCATAATGCAGTTTCCTGGTTGTATTAATCTTATTGCAAACCTCCTTAGATCAGAGTCTAGTGCAACATGTGAGGCAGCTGCAGGTCTTTTACGATCAATATCTTCAGTCAATCTATATAGGAACTCTGTAGCAGATAGTGGAGCAATAGAAGAGATAAATCGATTGTTGACGCAATCATCCTTGGCCACTGAGGTGAAGGAGCAGAGTATGGGTACACTCTGGAATTTATCTGTTGATGAGAAGCTCTGCATGAGACTGGCAAAGAGTGACATTCTACCCTTATGTATTAAATACCTTGATGATGAGGATATGAAAGTAAAGGAAGCTGCTGGAGGCATTTTGGCAAATTTAGCATTGAACCGTAGTAACCATGACGCAATGGTTGAAGCAGGTGTTATACCAAAATTGGCAAAGTTCTTAATATCTAATTCAGAAGGTTCTAAAGTTATTAAAAAGGAAGCAAGAAATGCATTGTTGGAACTTGTTAAGAGTGATGATTATTATAGAATTCTTGTTATTGAAGAAGGACTGGTTCCTGTGCCATTAATTGGCGCTGCGGCATATAAGTCATTCACCCCACGTTTACATGAGTGGCCCACATTACCAGATGGAACAGAAATTGAAAAGACTCCTGGACAAAATTCCAAATATGGTGCATCAGAATTACTTCTTGGATTAAATATTGATGACAAGAATGCTAACCTAGACGAAGCAAAAGCCAATGCAATCATTGGACGGACACAACAGCAATTCCTTGCTCGTATTGGGGCTATAGAAATGGAAGAGAAGACGGTATCTGAATCCTCAAATGATCAACTGCTTACACTTTTGTCTTGGAGGGATGGTGTTGCTCGTTTGGTGCTGATATTAGAACTTGAAGATAAGTCTGCAATTGTAAGGTCTGCAGAGTCAATTGCTGGTGCATGTATCAACGAATACATGCGCATTGCATTTAAGGAGGCTGGTGCAGTTAAAAATTTAGTTCGTCTTTTGTATTGTGATCATAATGAGGTCCAATTTGCTGTGATACAAGCTTTGGAAAGGCTGTCTGCCAGCAATGTTGTTTGCCGGGTGATTGAAGCTGAGGGTGCTTTACATCCTTTAGTCAGTATTTTAAAGCGCTCAGAAACAAGTGGACTTGCTGTGGAGAAGGCTCTGAACATAGTTGCTCGGATACTGGACCCCAGTAAAGAGATGCAGTTGAAGTTAATGGATCTGAGAAGATGTTTGACAGAGCAAAAGGTGAAGTTCCAGCGGGGTTAA 1626 0.4188 MFPAALSVVTPSKLSAFIIPSSHSQHLLHPNNATRLSIFSKPSSSRLSLLLPRLSSSNGPDATSSSPSGIDAVESTSSGLGDGYVALFVRMLGLDHDPLDREQAIVALWKYSLGGKKCIGTIMQFPGCINLIANLLRSESSATCEAAAGLLRSISSVNLYRNSVADSGAIEEINRLLTQSSLATEVKEQSMGTLWNLSVDEKLCMRLAKSDILPLCIKYLDDEDMKVKEAAGGILANLALNRSNHDAMVEAGVIPKLAKFLISNSEGSKVIKKEARNALLELVKSDDYYRILVIEEGLVPVPLIGAAAYKSFTPRLHEWPTLPDGTEIEKTPGQNSKYGASELLLGLNIDDKNANLDEAKANAIIGRTQQQFLARIGAIEMEEKTVSESSNDQLLTLLSWRDGVARLVLILELEDKSAIVRSAESIAGACINEYMRIAFKEAGAVKNLVRLLYCDHNEVQFAVIQALERLSASNVVCRVIEAEGALHPLVSILKRSETSGLAVEKALNIVARILDPSKEMQLKLMDLRRCLTEQKVKFQRG 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120936g00015 541 Gene3D - 80 311 IPR011989 -
Stsc120936g00015 541 SUPERFAMILY ARM repeat 87 515 IPR016024 -
Stsc120936g00015 541 Gene3D - 371 534 IPR011989 -
Stsc120936g00015 541 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 59 525 - -
Stsc120936g00015 541 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 211 253 IPR000225 GO:0005515
Stsc120936g00015 541 MobiDBLite consensus disorder prediction 55 74 - -
Stsc120936g00015 541 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 168 201 IPR000225 GO:0005515
Stsc120936g00015 541 SMART arm_5 432 472 IPR000225 GO:0005515
Stsc120936g00015 541 SMART arm_5 241 284 IPR000225 GO:0005515
Stsc120936g00015 541 SMART arm_5 156 199 IPR000225 GO:0005515
Stsc120936g00015 541 SMART arm_5 200 240 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120936g00015 Stsc-Chr120936 80995 86866 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120936g00015 108 318 U-box Gene Family AT2G23140 28.226 6.59e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120936g00015 - - gmx:100793128 716.457