Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120936g00014 ATGTTTCCGGCGGCGTTGAGTGTTGTCACGCCCTCTAAGCTCTCTGCTTTCATCATCCCTTCTTCACATTCACAGCACCTTCTTCACCCAAACAACGCAACAAGACTCTCAATCTTTTCAAAACCCAGCTCCTCCAGACTCTCTCTCCTCCTTCCCAGGCTCAGTTCTAGTAACGGTCCTGATGCAACCTCTTCATCCCCTTCAGGTATTGATGCAGTAGAGAGTACATCTTCTGGTCTTGGTGATGGTTATGTGGCCTTATTTGTTCGTATGTTGGGCTTAGATCATGATCCTCTGGATAGAGAGCAAGCTATAGTTGCTCTCTGGAAATATTCACTTGGTGGAAAGAAGTGTATTGGCACCATAATGCAGTTTCCTGGTTGTATTAATCTTATTGCAAACCTCCTTAGATCAGAGTCTAGTGCAACATGTGAGGCAGCTGCAGGTCTTTTACGATCAATATCTTCAGTCAATCTATATAGGAACTCTGTAGCAGATAGTGGAGCAATAGAAGAGATAAATCGATTGTTGACGCAATCATCCTTGGCCACTGAGGTGAAGGAGCAGAGTATGGGTACACTCTGGAATTTATCTGTTGATGAGAAGCTCTGCATGAGACTGGCAAAGAGTGACATTCTACCCTTATGTATTAAATACCTTGATGATGAGGATATGAAAGTAAAGGAAGCTGCTGGAGGCATTTTGGCAAATTTAGCATTGAACCGTAGTAACCATGACGCAATGGTTGAAGCAGGTGTTATACCAAAATTGGCAAAGTTCTTAATATCTAATTCAGAAGGTTCTAAAGTTATTAAAAAGGAAGCAAGAAATGCATTGTTGGAACTTGTTAAGAGTGATGATTATTATAGAATTCTTGTTATTGAAGAAGGACTGGTTCCTGTGCCATTAATTGGCGCTGCGGCATATAAGTCATTCACCCCACGTTTACATGAGTGGCCCACATTACCAGATGGAACAGAAATTGAAAAGACTCCTGGACAAAATTCCAAATATGGTGCATCAGAATTACTTCTTGGATTAAATATTGATGACAAGAATGCTAACCTAGACGAAGCAAAAGCCAATGCAATCATTGGACGGACACAACAGCAATTCCTTGCTCGTATTGGGGCTATAGAAATGGAAGAGAAGACGGTATCTGAATCCTCAAATGATCAACTGCTTACACTTTTGTCTTGGAGGGATGGTGTTGCTCGTTTGGTGCTGATATTAGAACTTGAAGATAAGTCTGCAATTGTAAGGTCTGCAGAGTCAATTGCTGGTGCATGTATCAACGAATACATGCGCATTGCATTTAAGGAGGCTGGTGCAGTTAAAAATTTAGTTCGTCTTTTGTATTGTGATCATAATGAGGTCCAATTTGCTGTGATACAAGCTTTGGAAAGGCTGTCTGCCAGCAATGTTGTTTGCCGGGTGATTGAAGCTGAGGGTGCTTTACATCCTTTAGTCAGTATTTTAAAGCGCTCAGAAACAAGTGGACTTGCTGTGGAGAAGGCTCTGAACATAGTTGCTCGGATACTGGACCCCAGTAAAGAGATGCAGTTGAAGTTTTATGACGGACCAGTTAATGGATCTGAGAAGATGTTTGACAGAGCAAAAGGTGAAGTTCCAGCGGGGTTAAGAAGCACGGAACAAACCATATCAGAAACAAACTCGAGGAATGCTATACTGGAATCTGGTTTTATTTCACGTCTTGTTGAGATTCTGAAGTCCTCTTCACCCAGTTTACAAGAAAAAGCTGCATCCGTGCTTGAGTTTGTTGCACTAGCTGACCAAACGTTGGCCTCTGTTATTTCTGCAGATATTGAATCTGGTCTCAACTCTGTTTTTCAGCAAAAAATTTTGAACATTTCAGCAGACATGGAATCTGATGTTGAAGAGCAGTTTTCAGAAGCATACACAATTGAATTTGAAGAAGCTGGTCGTGCCATATCTGCAGCATCCCGGCTGATGACAAGACTACTTGATAATGAGCAATTCCGGTGTAAAATAGATTCCTCCCATTTCATCGGCTTGCTTCGTGAAATCCTCCGATCGAGTGTCCCTCTCCATCACAAAGATTGGGTAGCTGCTTGCCTTGTCAAACTTAGTTTTCTCTCTAGTTCCAACACTTCTAATCCAATCAATGTGGAAGTTACACTTTATGAGACAATTCCAAGGCTTCTGGAACAGATTAAAAATTCGTTTTCTCGAGAAACACAGGAAAATGCTGTGGTAGAGCTCAACAGAATAGTGTCTGAAGGAGTGGTGGATTCCAGTGGAGCTATTATTTNNNNNNNNNNCTATCCATTGGTGAAGCTGATTGAAGAAGGGAGTGAAAGGGCAGTTGAGGCAAGCTTGGCAATACTGTACAATCTGAGTATGGACAGTGACAACCATTCGGCACTCGTGGCTGCCGGAGCAGTCCCGGCCTTGAGAAAAGTTATTCTGGCTGAGAGACCACATTGGGAACGGGCGCTTCGACTGCTTCGAAATTTGCCAACATGA 2508 0.4226 MFPAALSVVTPSKLSAFIIPSSHSQHLLHPNNATRLSIFSKPSSSRLSLLLPRLSSSNGPDATSSSPSGIDAVESTSSGLGDGYVALFVRMLGLDHDPLDREQAIVALWKYSLGGKKCIGTIMQFPGCINLIANLLRSESSATCEAAAGLLRSISSVNLYRNSVADSGAIEEINRLLTQSSLATEVKEQSMGTLWNLSVDEKLCMRLAKSDILPLCIKYLDDEDMKVKEAAGGILANLALNRSNHDAMVEAGVIPKLAKFLISNSEGSKVIKKEARNALLELVKSDDYYRILVIEEGLVPVPLIGAAAYKSFTPRLHEWPTLPDGTEIEKTPGQNSKYGASELLLGLNIDDKNANLDEAKANAIIGRTQQQFLARIGAIEMEEKTVSESSNDQLLTLLSWRDGVARLVLILELEDKSAIVRSAESIAGACINEYMRIAFKEAGAVKNLVRLLYCDHNEVQFAVIQALERLSASNVVCRVIEAEGALHPLVSILKRSETSGLAVEKALNIVARILDPSKEMQLKFYDGPVNGSEKMFDRAKGEVPAGLRSTEQTISETNSRNAILESGFISRLVEILKSSSPSLQEKAASVLEFVALADQTLASVISADIESGLNSVFQQKILNISADMESDVEEQFSEAYTIEFEEAGRAISAASRLMTRLLDNEQFRCKIDSSHFIGLLREILRSSVPLHHKDWVAACLVKLSFLSSSNTSNPINVEVTLYETIPRLLEQIKNSFSRETQENAVVELNRIVSEGVVDSSGAIIXXXXYPLVKLIEEGSERAVEASLAILYNLSMDSDNHSALVAAGAVPALRKVILAERPHWERALRLLRNLPT 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120936g00014 835 Gene3D - 80 311 IPR011989 -
Stsc120936g00014 835 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 766 808 IPR000225 GO:0005515
Stsc120936g00014 835 SUPERFAMILY ARM repeat 406 822 IPR016024 -
Stsc120936g00014 835 Gene3D - 378 615 IPR011989 -
Stsc120936g00014 835 Gene3D - 642 834 IPR011989 -
Stsc120936g00014 835 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 60 835 - -
Stsc120936g00014 835 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 211 253 IPR000225 GO:0005515
Stsc120936g00014 835 SMART arm_5 432 472 IPR000225 GO:0005515
Stsc120936g00014 835 SMART arm_5 241 284 IPR000225 GO:0005515
Stsc120936g00014 835 SMART arm_5 796 835 IPR000225 GO:0005515
Stsc120936g00014 835 SMART arm_5 555 596 IPR000225 GO:0005515
Stsc120936g00014 835 SMART arm_5 200 240 IPR000225 GO:0005515
Stsc120936g00014 835 SMART arm_5 156 199 IPR000225 GO:0005515
Stsc120936g00014 835 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 168 201 IPR000225 GO:0005515
Stsc120936g00014 835 SUPERFAMILY ARM repeat 84 299 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120936g00014 Stsc-Chr120936 80995 86866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120936g00014 108 318 U-box Gene Family AT2G23140 27.823 1.22e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120936g00014 - - gmx:100793128 1128.24