Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120936g00012 ATGGTTGATCTACAGCACCTGTCACATGGTGGTGTGGATTACAGTTCAATAATGGCAACGACATTAGTGTTCTTCATATTTTTCTGTATATTCAATACAGTTTGCAATGCCTTTGGAGGTGCGAGTTTCAATCCAACAGGTAATGCTTCCTTCTATGCAGCTGGTTCTGGCTCAGATTCCCTTTTCTCAATGGCTCTTCGTTTTCCAGCTCAGGCATTGGGTGCAGTTGGTGGTGCAGTGGCAATCATGGAAGTAATGCCAATGAAATACAAGCACATGATAGGTGGGCCCACTTTGAAAGTAGACATGAAAACAGGAGCTGTTGTTGAAGGGGTATTGACATTTGTGATAAGCTTCATAGTTCTCTTCATCTCACTCAGAGGCCCTCGAAGTTCATTCATCAAGACTTGGTTAATCGCCATTGCAGTTGTGACTTTAGTCAATATCGGTTCAGTTTACACCGGCCCCGCCATGAATCCTGCCATTGCCTTTGGTTGGGCATACTTAGAGAATTCACACAATACATGGGACCAATTTTATGTTTATTGGATTTGTCCCTTCATTGGTTCAATCTTGGCTGCTTGGTTATTCCGTATTGTGTTCCCACCCAAAGTAATAGTAAAACAAAAGAAAGCTTAA 639 0.4225 MVDLQHLSHGGVDYSSIMATTLVFFIFFCIFNTVCNAFGGASFNPTGNASFYAAGSGSDSLFSMALRFPAQALGAVGGAVAIMEVMPMKYKHMIGGPTLKVDMKTGAVVEGVLTFVISFIVLFISLRGPRSSFIKTWLIAIAVVTLVNIGSVYTGPAMNPAIAFGWAYLENSHNTWDQFYVYWICPFIGSILAAWLFRIVFPPKVIVKQKKA 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120936g00012 212 Gene3D Glycerol uptake facilitator protein. 4 211 IPR023271 -
Stsc120936g00012 212 FunFam Aquaporin SIP1-1 4 212 - -
Stsc120936g00012 212 SUPERFAMILY Aquaporin-like 12 204 IPR023271 -
Stsc120936g00012 212 PANTHER AQUAPORIN SIP1-1 11 211 IPR044222 GO:0015250
Stsc120936g00012 212 Pfam Major intrinsic protein 34 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120936g00012 212 PRINTS Major intrinsic protein family signature 63 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120936g00012 212 PRINTS Major intrinsic protein family signature 140 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120936g00012 212 PRINTS Major intrinsic protein family signature 180 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120936g00012 212 PRINTS Major intrinsic protein family signature 109 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120936g00012 Stsc-Chr120936 71024 72574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120936g00012 11 212 Major Intrinsic Protein MIP AT5G18290 56.585 6.46e-69 209