Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120936g00011 ATGATGGACCAGCAGCAGCCTTTAGCTTTGGATTTGCCTCCGGGTTTCAGGTTCCACCCAACTGATGAGGAGATCATCTCTTATTACCTCATTCCCAAGGTTATCAACATCACCTTCACTGCAACCGCCATTGGAGAAGCTGATCTCAACAAGTGCGAGCCATGGGACTTGCCCAAGAAAGCGAAGATGGGGGAGAAAGATTGGTACTTCTTCTGGCAAAGAGATAGGAAGTACCCAACAGGGACGAGAACCAACCGAGCCACGGAATCCGGTTACTGGAAGGCCACCGGAAAAGATAAAGAGATTTTCAAGGGGAAAGGTAATAAAAACCTTGTTGGCATGAAGAAAACTCTAGTCTTCTACAGAGGGAGAGCCCCTAATGGACAAAAAACCAACTGGGTTATGCATGAGTTCAGATTGGAAGGCCCTTTCGCTTCTTACAACCTCCCTAAACCTGCTAAGGAGGAATGGGTTGTGTCGAGGGTTTTTCATAAGAGCACAGCAGAAAAATTGATCCCAAGTATTCCATCAGGAGTGTTTAGGATAATGAAGAACGTGAACTCAATTGGGGATGATGATCTTCTAGATTTTTCTTCTCTCCCACCTCTCATGGATCCTTCTAATAATTATGATGATGATCAACACACCAACAACAACAACTACATCAATAATTTGTTGGCTTCATCATCATCATCAGATTATAATTGTCTTCTTCATCAGCAAATCAAGAAGGACGATGATGATAATAATGTTCTTCTAATAAGAGCGAAGAAAGATAATAATAATAATGGTAGTAGAGGATTATTATTGTATGACCCTCCATCATCATCATCATCTGAAGTAGTTGCTCCTCTCTCTGACTTGGAATTATGCCTCTGGGATGATATATAA 891 0.4186 MMDQQQPLALDLPPGFRFHPTDEEIISYYLIPKVINITFTATAIGEADLNKCEPWDLPKKAKMGEKDWYFFWQRDRKYPTGTRTNRATESGYWKATGKDKEIFKGKGNKNLVGMKKTLVFYRGRAPNGQKTNWVMHEFRLEGPFASYNLPKPAKEEWVVSRVFHKSTAEKLIPSIPSGVFRIMKNVNSIGDDDLLDFSSLPPLMDPSNNYDDDQHTNNNNYINNLLASSSSSDYNCLLHQQIKKDDDDNNVLLIRAKKDNNNNGSRGLLLYDPPSSSSSEVVAPLSDLELCLWDDI 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120936g00011 296 SUPERFAMILY NAC domain 9 165 IPR036093 GO:0003677|GO:0006355
Stsc120936g00011 296 Gene3D NAC domain 21 169 IPR036093 GO:0003677|GO:0006355
Stsc120936g00011 296 ProSiteProfiles NAC domain profile. 12 165 IPR003441 GO:0003677|GO:0006355
Stsc120936g00011 296 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 238 - -
Stsc120936g00011 296 FunFam NAC domain-containing protein 100-like 21 169 - -
Stsc120936g00011 296 Pfam No apical meristem (NAM) protein 13 140 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120936g00011 Stsc-Chr120936 53618 55443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120936g00011 10 207 NAC Transcription Factor Family AT5G18270 73.632 1.27e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc120936g00011 NAM 1.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120936g00011 - - aip:107623055 408.683