Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120936g00010 ATGGGGGAGAAAGATTGGTACTTCTTCTGGCAAAGAGATAGGAAGTACCCAACAGGGACGAGAACCAACCGAGCCACGGAATCCGGTTACTGGAAGGCCACCGGAAAAGATAAAGAGATTTTCAAGGGGAAAGGTAATAAAAACCTTGTTGGCATGAAGAAAACTCTAGTCTTCTACAGAGGGAGAGCCCCTAATGGACAAAAAACCAACTGGGTTATGCATGAGTTCAGATTGGAAGGCCCTTTCGCTTCTTACAACCTCCCTAAACCTGCTAAGGAGGAATGGGTTGTGTCGAGGGTTTTTCATAAGAGCACAGCAGAAAAATTGATCCCAAGTATTCCATCAGGAGTGTTTAGGATAATGAAGAACGTGAACTCAATTGGGGATGATGATCTTCTAGATTTTTCTTCTCTCCCACCTCTCATGGATCCTTCTAATAATTATGATGATGATCAACACACCAACAACAACAACTACATCAATAATTTGTTGGCTTCATCATCATCATCAGATTATAATTGTCTTCTTCATCAGCAAATCAAGAAGGACGATGATGATAATAATGTTCTTCTAATAAGAGCGAAGAAAGATAATAATAATAATGGTAGTAGAGGATTATTATTGTATGACCCTCCATCATCATCATCATCTGAAGTAGTTGCTCCTCTCTCTGACTTGGAATTATGCCTCTGGGATGATATATAA 705 0.3986 MGEKDWYFFWQRDRKYPTGTRTNRATESGYWKATGKDKEIFKGKGNKNLVGMKKTLVFYRGRAPNGQKTNWVMHEFRLEGPFASYNLPKPAKEEWVVSRVFHKSTAEKLIPSIPSGVFRIMKNVNSIGDDDLLDFSSLPPLMDPSNNYDDDQHTNNNNYINNLLASSSSSDYNCLLHQQIKKDDDDNNVLLIRAKKDNNNNGSRGLLLYDPPSSSSSEVVAPLSDLELCLWDDI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120936g00010 234 Pfam No apical meristem (NAM) protein 2 78 IPR003441 GO:0003677|GO:0006355
Stsc120936g00010 234 SUPERFAMILY NAC domain 2 103 IPR036093 GO:0003677|GO:0006355
Stsc120936g00010 234 Gene3D NAC domain 1 107 IPR036093 GO:0003677|GO:0006355
Stsc120936g00010 234 ProSiteProfiles NAC domain profile. 1 103 IPR003441 GO:0003677|GO:0006355
Stsc120936g00010 234 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120936g00010 Stsc-Chr120936 53618 55568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120936g00010 1 145 NAC Transcription Factor Family AT5G18270 71.622 1.75e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc120936g00010 NAM 4.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120936g00010 - - aip:107623055 307.375