Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120936g00008 ATGGTGAATCCAATTACTCAATCTGACAATAACAACAAGTGCCCCATTTGTGACACAGAGTTTGCTGACATAATCATGGGTAACATAAGAGATCAAAGTGGTGATGATGCCATTGATTTAAGGTTTACTTGGATGTTCTCACTCTATGCCCCAATTTTTCTAGGCTTGATGGGTTCAATTAGCCCTTTTATCACCCGCGGCCCGGCCGGCGAAGATACCACCCTTGGCAACATCACCGGAGCCGCCGTGGGCGAAGATGATGACATAGAAAATAGTAATGAATTTATGCATAATAATAATATGAGAAGGAGAAGAGCATCAAGTTATTATGTAATGCATCTCTTCAGAGGTCTTCATGTGAGGATGGTCTCTGAATCTGAGAGCTTTGATCATAATAACAATAGAAACATGGATGCTAACATGGTTGTTATTGATCCATTTACTGATGCAGCCTTGATGATTTTTCGAGTTCCGAACATGAGTCATTCAGCAAGTACTAATCAACATGAGAATAATAATAATGGAACAATTGGATCCTTCCATGAGTTTCTGGTGGGATCTGGATTTGATTTGTTGCTACAACAATTGGCACAGAATGGAGCAAGTGGTGGTGGATATGGAAGTGTTGTGAACCCTCCAACAAAGAAGGCAGCAATAGAAGCATTGCCGAGTGTGATCATCAATGAAGAGATTTTGCAGTGCATGGTTTGTTTGGAGGACATTGAGATTGGAAATGAAGCAAAGGAGATGCCATGTCACCATAAATTCCATAGTGAATGCATAATGGCATGGCTGAAACCACATAGCTCATGCCCTGTTTGTAGGTTTCAGATGCCCTCTGAGGATTCAACAGGGGAAGCTAATTTGGAAATTAGAGATGGGAATCAAAATAGTAGTGAGCTTGTCACTGCTTCAAGAAGAAATTGGTTTCCAATGCTGAACTCATTGAATAATTTTCTTCCATCTCCTTGA 972 0.4064 MVNPITQSDNNNKCPICDTEFADIIMGNIRDQSGDDAIDLRFTWMFSLYAPIFLGLMGSISPFITRGPAGEDTTLGNITGAAVGEDDDIENSNEFMHNNNMRRRRASSYYVMHLFRGLHVRMVSESESFDHNNNRNMDANMVVIDPFTDAALMIFRVPNMSHSASTNQHENNNNGTIGSFHEFLVGSGFDLLLQQLAQNGASGGGYGSVVNPPTKKAAIEALPSVIINEEILQCMVCLEDIEIGNEAKEMPCHHKFHSECIMAWLKPHSSCPVCRFQMPSEDSTGEANLEIRDGNQNSSELVTASRRNWFPMLNSLNNFLPSP 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120936g00008 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 129 279 - -
Stsc120936g00008 323 FunFam E3 ubiquitin-protein ligase RNF181 205 281 - -
Stsc120936g00008 323 Pfam Ring finger domain 233 275 IPR001841 -
Stsc120936g00008 323 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Stsc120936g00008 323 SUPERFAMILY RING/U-box 224 280 - -
Stsc120936g00008 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 281 IPR013083 -
Stsc120936g00008 323 SMART ring_2 234 274 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120936g00008 Stsc-Chr120936 32618 33589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120936g00008 187 296 C3H Transcription Factor Family AT1G26800 40.541 1.46e-20 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120936g00008 - K11982 aip:107621247 419.853