Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120935g00013 ATGTTCATGTTCATCCCAGGCACTCATGAGCTCCAATCAGATCAGACCAAAGCCTTGCTTCAACTAAGGAAATTACTCGAATACCCTCCCTCTTTACAAGCCTGGGAAAATGAAAATTACAATGCTGACCTCTGTACCCTTTCTTCCTCCCCAAATTTGACCGTTAAATGCGAGGATGATTCAGTAACTGAGCTTAAAATCTTGGGAGATAAATCTCTCAAGCCATCTACCTTCAATGGTTACGCAATTCCCAATCATACACTAACCCTAGATTTCTCCATTGATTCATTTTTCACCACTCTGACAAGGCTAACAAGCTTGAGGGTTCTTAGCTTAGTGTCCTTAGGGTTATGGGGGCCACTACCTGAAACTGTTCATCGTTTGTCTTTGCTTGAGGTTTTGGATTTGAGTTCAAATTTCTTGTTTGGTGCTTTGCCACCAAGATTATCCACCATGGTAAAGCTTTACACTGTAACACTTGATGATAATTACTTTAATGCCACTCTCCCTTATTGGTTTGCCTCTTTCTCTAATCTAACAATGTTGAGTTTGAAGAGCAATCAATTCAAGGGTCAATTCCCTGATTCACTTTGCAAAATTCAAACACTTGAAGTTATTTCCATGCCAAACAATTTGATTTATGGTGAATTGCCTGATTTAAGTTCTCTTATTGGTTTACATGTTTTGGATTTGAGGGAAAATGATTTAGATTCTCAACTACCATTGTTGCCTAAATCAGTAGTCACAGTTTTGTTGAGCAATAATTCTTTACATGGAGAGATTCCTAAGAAATTTGGTGAGTTGGATCATCTTCAGCATCTAGATCTTTCATCAAATTACCTAAGCAGGGTTCCACCACCTTCCTTGTTCTCCTTGCCAAACATTAGTTATTTGAATCTGGCAAACAATGTGTTAAGTGGTTGCATTCCGGGGAAGCTTACTTGTGGTGGCAAACTCGGGTTTGTGGATATTTCTGGTAACAAGCTGAATGGTGGACTACCTTCTTGCTTGGTTAATACATCTGACAGTAGAGTTGTTAGATATGGTGGAAACTGTTTATCTCTCGACAATGTCGATTCGCACACTCAGCGACGAGGGTCTTATTGCGACGAATCTGGCTTCGGGTGGAAGAAAGTCGAGGCATGGAAAGTAGCCGTGGCAGTGGCCTTGGTAGTCGGAATTGTGATTGCGATTCTCGTGTCTGGAGTTTTCTTGTGTAAAAAATGTCATCAGAGGAAGATAATTAGGCATGATTTGTTGCCTAAGATTCTCCAAGGAAACTCCACTCCAGGGGTTTCCTCTGAAATCCTTGCAAATGCTAGATTCATTTCTCAAACAGTCAAGCTTGGTTCGCAAGCTACTACAACCTGTCGGCAGTTTTCAATAGAAGAGTTGAAGGAAGCTGCAAGAAACTTTGACATGTCAACTTATGTTGGTGAAGGGTCCATAGGGAAGCTGTACAAAGGTAAACTAGAGAATGGACCCCACGTGATGATAAGATCTTTACCTCTGTCGAAGAAATGCTCAATTCAAAATCTTAAAGCTCGCTTGGATTTGCTCTCAAAGCTTCAACACCCAAATTTGGTTAGCCTTTTGGGTCATTGTATTGAATTCCGGGGACATGATGATTCCAGTTCCAACAAACTTCATCTTGTGTATGAATATGTGCCAAATGGAAATTATCGCAGCTATTTATCAGAGTTTTCAGCAGGGAAGGCACTTAAATGGTCTGATAGACTTGCAATTCTAATTGGAGTTGCTAAAGCTGTGCATTTCCTACACACTGGTGTCATCCCTGGTTGTTTTGAAAACCAGCTAAAGACAAGGAATATTTTGCTTGATGAGCATCGCATTCCGAAACTAAGCGACTACGGAATTGCCATCATTAGAGAAGAAATAGACAAGCATGAGGCAAAGGGAGAAAAACTAAAATCATGCCAGAGGACAAAACTGGAGAGTGATGTTTATAATTTTGGGTTCATATTGCTTGAATCGCTTGTGGGACCGATAGCAAGCGACAAAGGAGAAACATTCTTTATAAATGAAAAGGCATCCTTTGGCAGCCAAGATGGTAGAAGAAAGATTGTGGATCCATTAGTACTAACCACTTGCTCGCAAGAGTCATTGTCAATCGCGATATCTATAACAACGAAATGCATATCACTAGAATCTTCATCTCGTCCCTCCTTCGAGGATGTCCTCTGGAACTTGCAGTATGCTGCTCAAGTCCAAGCCACTTCGGAGGCGGATCAGAAATCAGATTCAAACACGACAGGTCCAAGTTTGTAG 2289 0.4089 MFMFIPGTHELQSDQTKALLQLRKLLEYPPSLQAWENENYNADLCTLSSSPNLTVKCEDDSVTELKILGDKSLKPSTFNGYAIPNHTLTLDFSIDSFFTTLTRLTSLRVLSLVSLGLWGPLPETVHRLSLLEVLDLSSNFLFGALPPRLSTMVKLYTVTLDDNYFNATLPYWFASFSNLTMLSLKSNQFKGQFPDSLCKIQTLEVISMPNNLIYGELPDLSSLIGLHVLDLRENDLDSQLPLLPKSVVTVLLSNNSLHGEIPKKFGELDHLQHLDLSSNYLSRVPPPSLFSLPNISYLNLANNVLSGCIPGKLTCGGKLGFVDISGNKLNGGLPSCLVNTSDSRVVRYGGNCLSLDNVDSHTQRRGSYCDESGFGWKKVEAWKVAVAVALVVGIVIAILVSGVFLCKKCHQRKIIRHDLLPKILQGNSTPGVSSEILANARFISQTVKLGSQATTTCRQFSIEELKEAARNFDMSTYVGEGSIGKLYKGKLENGPHVMIRSLPLSKKCSIQNLKARLDLLSKLQHPNLVSLLGHCIEFRGHDDSSSNKLHLVYEYVPNGNYRSYLSEFSAGKALKWSDRLAILIGVAKAVHFLHTGVIPGCFENQLKTRNILLDEHRIPKLSDYGIAIIREEIDKHEAKGEKLKSCQRTKLESDVYNFGFILLESLVGPIASDKGETFFINEKASFGSQDGRRKIVDPLVLTTCSQESLSIAISITTKCISLESSSRPSFEDVLWNLQYAAQVQATSEADQKSDSNTTGPSL 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120935g00013 762 ProSiteProfiles Protein kinase domain profile. 472 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120935g00013 762 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 12 245 - -
Stsc120935g00013 762 SUPERFAMILY Protein kinase-like (PK-like) 452 741 IPR011009 -
Stsc120935g00013 762 Gene3D Ribonuclease Inhibitor 246 369 IPR032675 -
Stsc120935g00013 762 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 435 555 - -
Stsc120935g00013 762 Pfam Protein tyrosine and serine/threonine kinase 475 734 IPR001245 GO:0004672|GO:0006468
Stsc120935g00013 762 Gene3D Phosphorylase Kinase; domain 1 434 555 - -
Stsc120935g00013 762 SUPERFAMILY L domain-like 101 353 - -
Stsc120935g00013 762 Gene3D Ribonuclease Inhibitor 12 245 IPR032675 -
Stsc120935g00013 762 Gene3D Transferase(Phosphotransferase) domain 1 556 759 - -
Stsc120935g00013 762 ProSiteProfiles Leucine-rich repeat profile. 270 291 IPR001611 GO:0005515
Stsc120935g00013 762 SMART LRR_typ_2 268 292 IPR003591 -
Stsc120935g00013 762 SMART LRR_typ_2 128 152 IPR003591 -
Stsc120935g00013 762 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 556 756 - -
Stsc120935g00013 762 Pfam Leucine rich repeat 154 213 IPR001611 GO:0005515
Stsc120935g00013 762 Pfam Leucine rich repeat 248 305 IPR001611 GO:0005515
Stsc120935g00013 762 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 247 374 - -
Stsc120935g00013 762 PANTHER UNNAMED PRODUCT 99 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120935g00013 Stsc-Chr120935 72802 76623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120935g00013 3 685 Miscellaneous Gene Families AT5G14210 53.468 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Stsc120935g00013 PK_Tyr_Ser-Thr 7.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120935g00013 - - gmx:100799183 1095.49