Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120935g00011 ATGGAAGACAAAACAGAGACCTCCATTGACCCAAAGAGCGGTTTCAACCGCGCTACCAAAACATTCCACAGCCTCAAACCCCCTCTGCACCTCCCTCCTCCACATGCCACCATCTCCGCACCATCATACATTCTCTCTCTCCGCCGCAACTCCCCTTGGTCCGACTCTATCACCGCCCTCATCGACTCCGCCACCGGCCGCCACCTCTCCTACGCCGAATTCATCCACCGTTCCGAAACCCTAGCTTCCAACCTCACCTCCCTCTTCGCACTCTCCAAATACGACACCGCTTTGATCCTCTCTCCCAACCTTATCCACGTTCCGATCCTCCACTTCGCGCTCCTCTCCCTCGGCGTCGTTGTTTCGCCCACAAATCCACTCGCCACACGCTCCGACCTCACTCGCATCGTCCGTCTCAGCAAACCGACCATCGCATTCGCCACGTCAGCATCGGTTAATAAACTTCCCGATGAGTTCCGTCACGGAACCGTCCTCATCGACTCGCCCGAGTTCGAATCGCTCATGTCGACGAGTCGACCCGGCGCCAAACTGGAACACGTGGAGGTGAGTCAGTCTGACGTGGCAGCTATTCTTTACTCTTCGGGAACCACAGGGAAGGTGAAGGGAGTGATGCTGACTCATAGGAACCTGACTGCGATGGCAGGTGTATACGACGTCGTTAGGGCGAAGAGGGAGAAGCCTGCAGTGTTCCTCTATACGATGCCGTTTTTTCATGTGTTCGGGTTCACGTACTCGCTGAGGGCGGTGGTACTGTTGGAAACGGTGGTGTTGATGGAGAGGTTTGGGTTGAGGAGGGCCATGGAGGCGATAGAGAGTTTTCGAGTTACGCACATTGCGGCAGTGCCGTCAATAATGGTGGCGATGATGAAGGACGAGGTGACGGCGGCTCATGATTTGAGTTCGTTGGAATGTGTCGCTTGCGGCGCGGCTCCGCTTGGAAAGGATACCGCCGCCACTTTCAAATCAAAGTTTCCCAAAGTGTTAGTCTTACAGGCAAGGCGATGCAGAACAACAGGTAAGCTGATGCCAGGTGTTGAAGCCAAGATTGTAAATCCACACACAGGGGATCCCATGTTTCCTGATGAACAAGGGGAACTCTGGCTCAGAGGACCTTCCATTATGAAAGGTTATGTTGGTGACCCAGAAGCAACTTCAGCAACTTTGGTGGATGGCTGGTTGAGGACTGGGGACCTCTGTTATTTTGATCATGAGGGTTTCCTCTATGTCCTTGACAGGTTCAAAGACTTGATCAAATACAAAGGCTACCAGGTGGCCCCTGCAGAATTAGAACAGTTGCTCCATTCACACCTTGAGATAAACGATGCGGCAGTTATTCCATATCCTGATGAAGAAGCAGGTCAAATCCCCATGGCCTTTGTGGTAAGAAAGCCCCAAAGTTCCCTTGATGAAGCAGAAATAATTGATTTTGTTGCTAAACAGGTTGCACCATACAAGAAAATAAGACGTGTAACATTTGTTGATTTAATACCAAAGAATGCAGCGGGGAAAATTCTAAGGAAAGATTTAAACAAAATTGCTCTTGAAAGATCTATCTCTAGGCTATAA 1587 0.5098 MEDKTETSIDPKSGFNRATKTFHSLKPPLHLPPPHATISAPSYILSLRRNSPWSDSITALIDSATGRHLSYAEFIHRSETLASNLTSLFALSKYDTALILSPNLIHVPILHFALLSLGVVVSPTNPLATRSDLTRIVRLSKPTIAFATSASVNKLPDEFRHGTVLIDSPEFESLMSTSRPGAKLEHVEVSQSDVAAILYSSGTTGKVKGVMLTHRNLTAMAGVYDVVRAKREKPAVFLYTMPFFHVFGFTYSLRAVVLLETVVLMERFGLRRAMEAIESFRVTHIAAVPSIMVAMMKDEVTAAHDLSSLECVACGAAPLGKDTAATFKSKFPKVLVLQARRCRTTGKLMPGVEAKIVNPHTGDPMFPDEQGELWLRGPSIMKGYVGDPEATSATLVDGWLRTGDLCYFDHEGFLYVLDRFKDLIKYKGYQVAPAELEQLLHSHLEINDAAVIPYPDEEAGQIPMAFVVRKPQSSLDEAEIIDFVAKQVAPYKKIRRVTFVDLIPKNAAGKILRKDLNKIALERSISRL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120935g00011 528 CDD 4CL 58 516 - -
Stsc120935g00011 528 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Stsc120935g00011 528 SUPERFAMILY Acetyl-CoA synthetase-like 56 522 - -
Stsc120935g00011 528 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 16 518 - -
Stsc120935g00011 528 Gene3D - 33 421 IPR042099 -
Stsc120935g00011 528 FunFam 4-coumarate--CoA ligase 2 422 523 - -
Stsc120935g00011 528 Pfam AMP-binding enzyme C-terminal domain 435 510 IPR025110 -
Stsc120935g00011 528 Gene3D - 422 524 IPR045851 -
Stsc120935g00011 528 Pfam AMP-binding enzyme 57 426 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120935g00011 Stsc-Chr120935 59361 62797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120935g00011 1 528 Monolignol Biosynthesis Gene Families AT5G63380 48.587 2.07e-179 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120935g00011 K01904 - gmx:100801143 691.034