Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120933g00021 ATGGCGGCTGCATCTGTAAGTAATGGTTTTGAGGAGCCGTTGAGGGAAAATGGGGATTGCAAATTTCATGTGCGGCCTGAGTGGAAGCGACGCAAAGTTTCTGCTGTTCGTGATTTCCCTGAGGGATGTGGACCGTTTGCTCCAAGGATTGATGAAGTGTTAAAGTGTGAGGACAATAGCCAGCATCCTGAGTTACATCCTGAAACTCCTGTCAAAACTACTGATTGCAGTTTGAATAAGGAAAATCCGGTGGTCTCATCTGATCAAGTGGATGTGCCTCCTCTGGTAAATGACGAACCTGCAAAAGTGTTGCTGCCGGATATGGAAGCTTTGGCAGATACAGAGTTGGGAAGAGCTGTGAGGTCGTCTTCTCCAGTTGGTGAGGAGGTTCCATCAGCTCATTCAAAGTCCTTGTCGTCCAATGTTGATATGGCTAGTTCCACTGCTTGGATGGAAAATATGGTAACTAGAAGATATTTTCCTCGAAGGAAAGTTTCAGCTATTAGAGACTTTCCTCCTTTATGTGGACGCAACGCTCCATCTCTCAATATGGATGAGGGTCTAAAGGAAATATCTTTGCTGAATGACAGTAGAGTGGTTGAACAGAAAATCCCTGTAAATGATGACCTGTTGAAAAAAGTAGCTGCTGCTGAAATGAAGGAAGTTGAAAACAATGCTCAAGATGAACTTTCTCGCAAGAGAAAGTTTGCGGACATGGGTTTAGCTGATTCTGAAGGGAATACTACGGAGAAGGTGAATAAGTTGGATGTATATGAACCATCTATTGGGATAAATAATCATCACAAAAACACCAGAGATAAGAAAATCACACTTACTGCAGAGATTGATCATCATCAGGCTGAAATAAATTCTAGTGAAGTGGAAAACGATGAACCTATACCAGTTGAGAAGACATCAAGAATGGAGATTATAGTGCACCCTGAAGTCCAGGCTCTTGAGGCAAAGCCTTTGCGGGCTGTATCAAACAGGAAGGTAGTGCTAGGGTTGATGGCTGTGTCAGAATGCCCTCAGAGGACTAATAATGATCCCTCCAATTTTAAAAGGATTGAAGGTGCAAAGGAAAGCAAAGGAAAGAAAGATGGTGTCTTGGTACGGCTTGGCAGGTCTATGACTGCTACTAGGACAAAAGATGGCACAAATCATTCTGGGTTGAAGCCCCTGAAGAAGAAAAAGAAAAATGTCGCTTCCCATGGCATAGGTCAATTAGAAATTTCGGACAAGGATTCTGTTGATCCTAATGAAAATGTTGTGGGCTCTGAAACTGGTCCTAAATCATGTAGTTTGAATGTCAATGTTCCTCCTCATAAATTGAGTGGTAATGAGAAGAATGACTCAAATGTGACTCGACATAAAGTGAGGGAAACACTACGGCTTTTTCAAGCTGTTTTTAGAAAGATTTTGCAGGAAGTAGAAGCAAAAAATGAGAGGGCAAGGGTCGACTTACAAGCAGCAAAGGTCCTTAAGGAGAAGGGAAAATATGTTAATGAAGGTAAGCAAATCCTTGGACATGTCCCTGGGATTGAAGTTGGTGATGAATTTCAGTATAGGATTGAGCTTAATATAGTTGGCCTTCATCGCCAAACTCAGGGTGGTATAGATTATGTGAAGCACAAGGGTAAGATTCTTGCAACAAGCATTGTTGCATCAGGGGGCTATGCAGATGATTTGGATAATTCAGATGTATTGATATATACAGGGCAAGGTGGTAACGTGATGAACTCTGGTAAAGAACCTGAAGATCAGAAGCTTGAGCGGGGAAATCTTGCTTTGAAGAATAGTAATGACGAACAGAACCCGGTTAGGGTGATACGTGGTGCTGATTCGGCGGATGGAAAGTCCAAGACATATGTTTACGATGGACTGTATCTAGTTGAGTCAGTTTGGCAGGATATGGGGCCACATGGGAAGCTGGTATATAAGTTTCGGTTGCGAAGAATCTCTGGTCAACCAGAGCTTCCTTTGAAGGAATTGAAGAAATCTAAAAAGTTCAAAACAAGAGAAGGTCTGTGTGTTAATGATATTTCTTATGGGAAAGAGCGAATTCCAGTATGTGCTGTGAATGTCATAGATGACGAAAAACCCCCACCTTTTAAATACATAACTAGCATGATTTATCCTGATTGTGATCTCATTCCTGCAGAAGGATGTGGTTGCATTAATGGATGTTCTGAGTTGAAATGTTCTTGTGTAGTGAAGAATGGAGGTGAAATCCCATACAATCACAATGGGGCTATTGTAGAAATAAAGAATCTAGTTTTTGAGTGTGGACCTTCTTGCAAGTGTCCTCCTACTTGCTATAACAGAGTCAGTCAACATGGCATAAAATTTCAACTTGAAATTTTTAAGACCAGTACAAGGGGATGGGGTGTGAGATCCCTAAATTCCATCCCTTCAGGAAGTTTTATCTGTGAATATATGGGAGAGCTTCTTGAAGATAAGGAGGCAGAACAAAGAACTGGTAGTGATGAGTATCTTTTTGATATTGGAAATAACTATACAAACAATCCTCTTCGGGACGGGCTTTCGGCCCTTATGCCTGATTCACAGTCAAGTTCTGGTGGAGTTTTGATGGATGATTGTGGCTTCACCATTGATGCTGCTCAGTATGGTAATGTGGGGAGATTCATCAACCACAGTTGTTCTCCAAATCTGTATGCTCAAAATGTGCTTTATGATCATCATGACAAAAGGATGCCTCATATAATGTTCTTTGCTGCTGAGAACATTCCTCCTCTACAAGAGCTGACTTACGACTACAATTACATGATTGACCAGGTCCGCGACTCCAATGGCAATATAAAACGGAAGGATTGCTACTGCGGTTCTGTTGAATGTACAGCCTTGGCTAAGAATGGAGCTCAAAGTAACACTCGTTAG 2898 0.4175 MAAASVSNGFEEPLRENGDCKFHVRPEWKRRKVSAVRDFPEGCGPFAPRIDEVLKCEDNSQHPELHPETPVKTTDCSLNKENPVVSSDQVDVPPLVNDEPAKVLLPDMEALADTELGRAVRSSSPVGEEVPSAHSKSLSSNVDMASSTAWMENMVTRRYFPRRKVSAIRDFPPLCGRNAPSLNMDEGLKEISLLNDSRVVEQKIPVNDDLLKKVAAAEMKEVENNAQDELSRKRKFADMGLADSEGNTTEKVNKLDVYEPSIGINNHHKNTRDKKITLTAEIDHHQAEINSSEVENDEPIPVEKTSRMEIIVHPEVQALEAKPLRAVSNRKVVLGLMAVSECPQRTNNDPSNFKRIEGAKESKGKKDGVLVRLGRSMTATRTKDGTNHSGLKPLKKKKKNVASHGIGQLEISDKDSVDPNENVVGSETGPKSCSLNVNVPPHKLSGNEKNDSNVTRHKVRETLRLFQAVFRKILQEVEAKNERARVDLQAAKVLKEKGKYVNEGKQILGHVPGIEVGDEFQYRIELNIVGLHRQTQGGIDYVKHKGKILATSIVASGGYADDLDNSDVLIYTGQGGNVMNSGKEPEDQKLERGNLALKNSNDEQNPVRVIRGADSADGKSKTYVYDGLYLVESVWQDMGPHGKLVYKFRLRRISGQPELPLKELKKSKKFKTREGLCVNDISYGKERIPVCAVNVIDDEKPPPFKYITSMIYPDCDLIPAEGCGCINGCSELKCSCVVKNGGEIPYNHNGAIVEIKNLVFECGPSCKCPPTCYNRVSQHGIKFQLEIFKTSTRGWGVRSLNSIPSGSFICEYMGELLEDKEAEQRTGSDEYLFDIGNNYTNNPLRDGLSALMPDSQSSSGGVLMDDCGFTIDAAQYGNVGRFINHSCSPNLYAQNVLYDHHDKRMPHIMFFAAENIPPLQELTYDYNYMIDQVRDSNGNIKRKDCYCGSVECTALAKNGAQSNTR 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120933g00021 965 Gene3D - 490 672 IPR036987 -
Stsc120933g00021 965 SUPERFAMILY PUA domain-like 490 665 IPR015947 -
Stsc120933g00021 965 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 306 950 - -
Stsc120933g00021 965 ProSiteProfiles Post-SET domain profile. 941 957 IPR003616 -
Stsc120933g00021 965 Pfam Pre-SET motif 681 775 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc120933g00021 965 SUPERFAMILY SET domain 668 928 IPR046341 -
Stsc120933g00021 965 MobiDBLite consensus disorder prediction 59 93 - -
Stsc120933g00021 965 Coils Coil 474 494 - -
Stsc120933g00021 965 ProSiteProfiles SET domain profile. 783 927 IPR001214 GO:0005515
Stsc120933g00021 965 Pfam SET domain 794 927 IPR001214 GO:0005515
Stsc120933g00021 965 CDD SET_AtSUVH-like 702 928 - -
Stsc120933g00021 965 MobiDBLite consensus disorder prediction 419 448 - -
Stsc120933g00021 965 MobiDBLite consensus disorder prediction 354 370 - -
Stsc120933g00021 965 MobiDBLite consensus disorder prediction 72 86 - -
Stsc120933g00021 965 SMART preset_2 678 767 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc120933g00021 965 Pfam SAD/SRA domain 508 656 IPR003105 -
Stsc120933g00021 965 ProSiteProfiles YDG domain profile. 509 652 IPR003105 -
Stsc120933g00021 965 MobiDBLite consensus disorder prediction 345 455 - -
Stsc120933g00021 965 ProSiteProfiles Pre-SET domain profile. 721 780 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc120933g00021 965 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 302 965 IPR025794 GO:0016571
Stsc120933g00021 965 Coils Coil 212 232 - -
Stsc120933g00021 965 Gene3D SET domain 673 955 IPR046341 -
Stsc120933g00021 965 SMART set_7 783 933 IPR001214 GO:0005515
Stsc120933g00021 965 SMART G9a_1 504 656 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120933g00021 Stsc-Chr120933 101189 104866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120933g00021 447 952 Su(var)3-9 homologs AT5G04940 40.797 7.28e-116 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc120933g00021 SAD_SRA 3.9e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120933g00021 K11420 - gmx:100803378 1038.87