Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120933g00020 ATGGAACTTAATTTTAAGTACCAATTAGGCCTTGTTATTAGTGTCATAATAATGCTGTTACCTTTAATGTGTACCTCTCAAGACTCATTTACTTGTTCCAGAGCAACCTATTATGGTAGCCCAGAATGCACTGCCAACCCAAGGGGAGCTTGTGGCTACGGCGAGTATGGAACGTTGATAAACGATGGCAGCGTGGCAGGCGTCTCTTGGTTATGGCGGAATGGATCTGGCTGTGGTGCATGCTATCAAGTTAGGTGCAAAATACCAGCATGCTGTGATGACTATGGAGCATATGTGGTGGTAACAGACTTTGGTGTGGGAGACAGAACTGACTTCATTATGAGTCCACGTGCTTATTCAAGACTGGGGAAGAACGAAGATTCATCTGCAGAGCTTTTCAAATACGGCGTTGTCGACGTAGAATACAAGAGGGTACCATGCAGGTACGGAAGCTATAACATCGTAGTGAAGGTGCATGAGCGCAGCTACAACCCACACTACTTCGCCATTGTCACTCTCTATGTTGGAGGAACACAAGACATAACTGCAGTTCAGTTCTGGCAGGAAGATTGCAAAGAGTGGAGGGCAATGAGAAGGGCGTTTGGGACAGTGTTTGATATTGAGAACCCACCAAGGGGTGACATAAAGTTAAGGTTCCAAGTGAGTGGCAGTGCAGGGGTGTATTGGGTAGAGTCCAAGAATGTTATCACCGGTGATTGGAAGGCTGGTGCATTTTATGATACTCAAATCCAGCTTGAATAG 762 0.458 MELNFKYQLGLVISVIIMLLPLMCTSQDSFTCSRATYYGSPECTANPRGACGYGEYGTLINDGSVAGVSWLWRNGSGCGACYQVRCKIPACCDDYGAYVVVTDFGVGDRTDFIMSPRAYSRLGKNEDSSAELFKYGVVDVEYKRVPCRYGSYNIVVKVHERSYNPHYFAIVTLYVGGTQDITAVQFWQEDCKEWRAMRRAFGTVFDIENPPRGDIKLRFQVSGSAGVYWVESKNVITGDWKAGAFYDTQIQLE 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120933g00020 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 248 IPR007117 -
Stsc120933g00020 253 SUPERFAMILY PHL pollen allergen 153 247 IPR036749 -
Stsc120933g00020 253 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Stsc120933g00020 253 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Stsc120933g00020 253 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Stsc120933g00020 253 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Stsc120933g00020 253 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Stsc120933g00020 253 Pfam Lytic transglycolase 65 142 IPR009009 -
Stsc120933g00020 253 SUPERFAMILY Barwin-like endoglucanases 16 149 IPR036908 -
Stsc120933g00020 253 Gene3D - 21 147 IPR036908 -
Stsc120933g00020 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 152 IPR007112 -
Stsc120933g00020 253 PANTHER EXPANSIN-B3 18 251 - -
Stsc120933g00020 253 Pfam Expansin C-terminal domain 154 236 IPR007117 -
Stsc120933g00020 253 Gene3D - 148 249 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120933g00020 Stsc-Chr120933 99787 100972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120933g00020 3 252 Expansin Gene Family AT4G17030 60.956 1.52e-115 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120933g00020 - - ccaj:109800044 434.876