Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120933g00017 ATGAAAGCAACCAACCTCCCTGCTTTGAATTTACTCTCCCAACAACTTTCTCACCGTAATTCTCACCTCACCATGGAAGAATTTCCACCCTTTCTAAACTCCAGTTTGAAGAAGGTTCCTGTAACGACGAAGAAAGGTTCACAGTTGACGATCTTCTATGGCGGTGAAGTTTTAGTGTTTGATGATATTGAAGCGGAGAAAGCCAAAGAGATAATGTGTTTTGCAAGCAAAGGTTCATCCACGATCTCGAAACCAAACCACCATAACAATAACAACATGAAGAACAACTACGGTTACAAATTGGCTCAGCGTTGTGCTTCATTTCCAAGTAGAAATTCTTGTGTTGTTCCTCCAACTTCTCCGTTCCCTTTTATGATCCCTGCTGCTACCATTCCCAACAATTCGGTTCAGCACATTCAACCACCTTCCAGATCCGTTGTTTCTGATCTACCACTTGCTAGGAAAGCTTCACTACACCGATTCTTGGAGAAGAGAAAGGATAGAATTGCTGCCAGAGCACCATATCAAACAAGCAGCCCCATTTCATGGCTTGGCATGGTACCTAGATCACCACAAGAGAATTCTGAGACTAGTTCCAGTGTAGTATAA 609 0.4269 MKATNLPALNLLSQQLSHRNSHLTMEEFPPFLNSSLKKVPVTTKKGSQLTIFYGGEVLVFDDIEAEKAKEIMCFASKGSSTISKPNHHNNNNMKNNYGYKLAQRCASFPSRNSCVVPPTSPFPFMIPAATIPNNSVQHIQPPSRSVVSDLPLARKASLHRFLEKRKDRIAARAPYQTSSPISWLGMVPRSPQENSETSSSVV 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120933g00017 202 Pfam tify domain 45 76 IPR010399 -
Stsc120933g00017 202 ProSiteProfiles Tify domain profile. 42 77 IPR010399 -
Stsc120933g00017 202 MobiDBLite consensus disorder prediction 180 202 - -
Stsc120933g00017 202 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 10 187 IPR040390 -
Stsc120933g00017 202 SMART tify_2 42 77 IPR010399 -
Stsc120933g00017 202 Pfam Jas motif 151 176 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120933g00017 Stsc-Chr120933 83453 84956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120933g00017 49 187 Tify Gene Family AT1G19180 36.842 6.19e-22 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Stsc120933g00017 tify 5.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120933g00017 K13464 - gmx:100306332 158.688