Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120933g00009 ATGCATTCCAAAAATGTTCCTGTTGCCTTCAGAACTCGCTCCAGAGTCACCATCACCGAACCTGCCGACGTTATCGGCCACAGTAGCTCCGACGACGACGACGACGAAGTCGTCGTTTATGGCGAAACTCCCCCGAAAGCTCCGCGTCCGGTTGTGTCTGAAGACAGTTCTGAAGAAAAAGGAGAAGAAGAAGAAGCTGAAGATGACGATGTACAGTTTCTAGGAGAAGAAGGAGTCGATTATAATGGTGGTGGTGATGATGATGTACCGGTTCTACGGGAAGAAGGAGTTGATTGTAATGGTGGTGGTGATGATGATGTACAGGTTAAAAGAGAAGAATGTTCTGAAGATCGCGGTGATGTGGGAGCTGAAGGAAGCAAAGGCAACAACGACAAAGACGACAATGGCTTCGATGGCGAGTGCAAAGAGGTTGGAAAATGGAAAAGAAGAAAATTTGGGGTTGATTTTTTGATTGATCAGAGTCCCAGCCCCGAGGGTAAGAGCGTTTCTCACAGGACACGTTCCCATTTTCCTAGAAGCAAGAAGAACCTCAATTTGGGGACTTTTAGTCAACCAATCTGCCTTGGTGATGATGAAGAAGAAGAAGAACAAGAACAAGAACAAGAACAACAAGAAAGGGAGAAAGATGTTGATGATGATGATGAAGAAGAAGAAGAAGCAGAAGAAGAGGATGATGATGATGAGTCTCTTTATGAATTAGGGGAAACTGATTTGGATGAGGATGATGATGATGATGATGATGACTACAGTGAAGAGAGGGGTGGCTATGACAAAGAGCATTGTGTTGTTGGTCATCATAATGGGAGAGAAAGGTATGCATATCTGAACAATGTGCCTAATTCTGAAGTGAAATTGGCAGGGAAGAAGCTGAAGCGGAAGCGTGTTGATTTGGCTAGCATGTTGAAGGATATGATACTTGACAAGGGAGAGATGCCTCTGCTGGAGCCTCCTATGGAAGAAGAACAACCAGGTACAATTGTGGAAGCCATGGACGTGCCAACAATGTCCCCTCTCAACAATGAGAAGCACACTCCACCGGAGAAGTCTGATGAGGAAATGTTTGATGAACTTTGGGCTGAGATGGAGAGTTGCTTCGGCTCTGATCCTCTTGATGAGGGACAGTATAATGAATTCAAATGCAGAGGTTCCAATAGGGAAAAGGGATCTCCTTTTGCATTGACAAGGAAGAAAGAAGATCATAATCTAACAGGGCTTAGTGAGGAATTTGAGGATATTTTTCCGGATTGTGTTGCTCATGAGAAGGATAAAGTGTCTACCAAGTCAAGCATTGAGCGGCGAAATTCATGTGCAGATTTGCCCTTTAACTTTACCTTTTTAGCTAAGGAACAGCCGGCGGAGAAATCGGAATTTGAGAAAGAAATGGATATGATCTGGTCGGAGATGGATCTTGGTCTTCATGTTATCCAACAAGACATTGCTTCTGCTGCTCCTCAGGATGAAAATAATACTTTTTCGGATCACGAACAATTTCTGGTGGAAGATGATGCTAACGCACCTCCTCTTTTTCGCTGCCGAAAAGGGGAACACAGTCTTGTTCTTGATGAGGAAATTGGGCTTATATGTAAATATTGCTTGCATGTGGCATTGGAGATCCAGTATTGGGTTCCTCCTTTTGTTGAAAGTCCATATGAAAAATCAGACAGGATAGAATATTATAATGGGGATTATGTTGACCGGTCTGTCTTGGACGAGCTTGATTATCGAACTTCTCCTAGTGATGATTATATCATTGGTAATCACAAGGGGACTGTGTGGGATTTGATTCCTGGAGTGAAGAAGACTATGTATCCTCATCAACGCGCAGCTTTTGAATTTATTTGGAGTAATTTAGCTGGTGGAATTAATGTTGATAGCCTGAAAGAAGAAACCACTGGAAATGGATGTGTTATATCTCATGCTCCTGGCACGGGGAAAACCCGTCTTGCTATTGTATTTATCCAGTCTTACATGAAGTTATATCCAACATGCTCACCAATGATTATTGCTCCTAAAGGCATGCTCCTTTCATGGGAAGAGGAGTTCAAAACATGGAATGTTGACATTCCCTTTCACAATTTGAACAATTCTGAATACTCTGGCAAAGAGAATGAAGCAGCTCTTAATCTTATCAATAAGTTTGGTCGTAATGCTTCAACTCAGACAGCAAAGTGGTATTGTCGTTTTGCTAAGTTGTATTCCTGGAAGCTTGGCAATAGCATCTTGGGAATTAGCTACAAACTGTTCGAGCTACTTACCCGGAAGGGCTCCCGTGACAAGGACTTGAGGATGTTCCTTCTTGGACAACCCAGTTTGTTAGTTCTTGATGAAGGGCACACTCCCCGCAATAAGAAATCTTTTGTATGGAAATCTGTCTCTGAAATTGAAACAAAGAGACGCATCATCCTTACCGGAACTCCCTTCCAAAATAATTTTAAGGAGCTATACAACACACTCTGCTTGGCAAGGCCTAAATTTGCTGAATGGAATCCAAGAAATGAACATGGAGGGAAATGGCGACAGCTTGTCAATTCATATGGAAAAGTTACCGATGCTAGTAGAAGACTCAAGATTTTGAAAGAGATCCGGGACATGATTCAACCTTTTGTTCATGTATACAAGGGAACCATACTGCAAGAGAGTCTCCCAGGGTTGAGGCAGTTGATAGTCATGTTGAAGCCAACCCAGTTGCAGGAGGAATTGCTTCAAGAGATTCAGAAGAGAATTGATAATGTGCTTAAATTAGAATACGAAGAGTCTGTAACAGCGTTTCATCCTTCTCTTTGCTTGCTATCCGAAGACAAGGAGAAGTTACAAAAGCTTAGATTGAACCCTAAGGCAAGTGCCAAAACAAACTTTTTAATAGAACTTATAAGGATCAGTGTGATTTTCAATGAAAAAGTTTTGGTTTTTAGCCAATTCATTGCTCCCTTAAAGCTTCTAATGACCCAGCTTAAGCAACATTTTAGTTGGGCCGAAGGAAGAGAGGTATTACAAATGCATGGAAAACAAGATGCAAAGCTTCGTCTGACTTTAATGAAAACTTTCAATCATCCGAGAAGCAAAGTAAGGGTAATGCTGGCATCAACCAAGGCTTGTTATGAAGGTATCTGTTTAGTAGGTGCCTCAAGGGTTGTTTTACTTGATGTTGTGTGGAATCCCTCGGTTGAGAGGCAAGCTATAAGCCGTGCTTATAGGATCGGCCAAGAGAAGCTTGTGTACACTTACCATTTGATCACTAAGGGGACAAAGGACGAGAAAAAATGTAGTTATCAAGCTATGAAGGATCAGTTGTCAGAGTTGGTGTTCTTTCATTCTGAAGGTGGGGTTCAAAATCATCAGCTTTTTTCACCTCCTGAATTAGAAGATGAAATTCTGGAGCAGATCATTGAGCAAGAAAAGTTTAGACACATAATTGAAAAAGTTGCTATTAAGAATACAAATCTAATTTGA 3471 0.4175 MHSKNVPVAFRTRSRVTITEPADVIGHSSSDDDDDEVVVYGETPPKAPRPVVSEDSSEEKGEEEEAEDDDVQFLGEEGVDYNGGGDDDVPVLREEGVDCNGGGDDDVQVKREECSEDRGDVGAEGSKGNNDKDDNGFDGECKEVGKWKRRKFGVDFLIDQSPSPEGKSVSHRTRSHFPRSKKNLNLGTFSQPICLGDDEEEEEQEQEQEQQEREKDVDDDDEEEEEAEEEDDDDESLYELGETDLDEDDDDDDDDYSEERGGYDKEHCVVGHHNGRERYAYLNNVPNSEVKLAGKKLKRKRVDLASMLKDMILDKGEMPLLEPPMEEEQPGTIVEAMDVPTMSPLNNEKHTPPEKSDEEMFDELWAEMESCFGSDPLDEGQYNEFKCRGSNREKGSPFALTRKKEDHNLTGLSEEFEDIFPDCVAHEKDKVSTKSSIERRNSCADLPFNFTFLAKEQPAEKSEFEKEMDMIWSEMDLGLHVIQQDIASAAPQDENNTFSDHEQFLVEDDANAPPLFRCRKGEHSLVLDEEIGLICKYCLHVALEIQYWVPPFVESPYEKSDRIEYYNGDYVDRSVLDELDYRTSPSDDYIIGNHKGTVWDLIPGVKKTMYPHQRAAFEFIWSNLAGGINVDSLKEETTGNGCVISHAPGTGKTRLAIVFIQSYMKLYPTCSPMIIAPKGMLLSWEEEFKTWNVDIPFHNLNNSEYSGKENEAALNLINKFGRNASTQTAKWYCRFAKLYSWKLGNSILGISYKLFELLTRKGSRDKDLRMFLLGQPSLLVLDEGHTPRNKKSFVWKSVSEIETKRRIILTGTPFQNNFKELYNTLCLARPKFAEWNPRNEHGGKWRQLVNSYGKVTDASRRLKILKEIRDMIQPFVHVYKGTILQESLPGLRQLIVMLKPTQLQEELLQEIQKRIDNVLKLEYEESVTAFHPSLCLLSEDKEKLQKLRLNPKASAKTNFLIELIRISVIFNEKVLVFSQFIAPLKLLMTQLKQHFSWAEGREVLQMHGKQDAKLRLTLMKTFNHPRSKVRVMLASTKACYEGICLVGASRVVLLDVVWNPSVERQAISRAYRIGQEKLVYTYHLITKGTKDEKKCSYQAMKDQLSELVFFHSEGGVQNHQLFSPPELEDEILEQIIEQEKFRHIIEKVAIKNTNLI 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120933g00009 1156 MobiDBLite consensus disorder prediction 155 268 - -
Stsc120933g00009 1156 CDD SF2_C_SNF 954 1085 - -
Stsc120933g00009 1156 SMART ultradead3 605 846 IPR014001 -
Stsc120933g00009 1156 Gene3D - 889 1153 IPR027417 -
Stsc120933g00009 1156 Coils Coil 195 230 - -
Stsc120933g00009 1156 MobiDBLite consensus disorder prediction 57 75 - -
Stsc120933g00009 1156 MobiDBLite consensus disorder prediction 1 140 - -
Stsc120933g00009 1156 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 962 1156 IPR001650 -
Stsc120933g00009 1156 MobiDBLite consensus disorder prediction 195 259 - -
Stsc120933g00009 1156 Gene3D - 592 868 IPR038718 -
Stsc120933g00009 1156 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 633 831 IPR014001 -
Stsc120933g00009 1156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 833 IPR027417 -
Stsc120933g00009 1156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 881 1127 IPR027417 -
Stsc120933g00009 1156 MobiDBLite consensus disorder prediction 87 140 - -
Stsc120933g00009 1156 Pfam Helicase conserved C-terminal domain 956 1074 IPR001650 -
Stsc120933g00009 1156 Pfam SNF2-related domain 616 943 IPR000330 GO:0005524|GO:0140658
Stsc120933g00009 1156 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 403 1148 IPR044567 GO:0080188
Stsc120933g00009 1156 SMART helicmild6 985 1074 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120933g00009 Stsc-Chr120933 51402 55561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120933g00009 972 1104 RAD5 or RAD16-like Gene Family AT5G43530 39.850 5.09e-17 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc120933g00009 SNF2_N 6.4e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120933g00009 K10875 - cave:132176595 703.36