Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120933g00003 ATGATGATGGCTGTTCAAGCTCAATACCCATCCAATGTTCTTCTTCTCAATAACAATACCAATAACAATAACAACAACAACAATGACCTCCATGACTATTCCTCCTTACAACCTCCTCCATCTATTGGGCGTAAGAGACCAAGAGAACATCAAAACCCAAATGCCATCAATGAACCTCCTTATCAAGTAATACACCAAACCCACCTCCACAATCACAATCTAGTCTCCACAGGCTTACGCTTATCCTTCTCCTCTCTTCAACCCCATCAACAACAACAAGCACTACAATTGCAGCAAACTTCTCTCAACTCATCATCATCGTCGTCGTCTCTATTATCCCAACAATTAGCCTCCCAAATCAAACAACAAAGACACGAAATTGACCAATTCCTACAAGCACAGGGAGAGCAACTGCGGCGTTCGTTAGCGGACAAGAGACAAACTCATTTCCGCGCGCTTCTAACCGCCGCGGAAGATACCTTAGCGCGACGCTTGAAGGATAAAGAAGAAGAAGTCCAGAAAGCCACGCGCCGTAACGCTGAGTTAGAAGCACAAGCCGCGCACCTTACCGCCCAGGCTCAGCTTTGGCAGGCCAAGGCAAAAGCGCAGGAAGCCACCGCCGCTTCTTTGCAGGCACAGCTCCATCACGCCATCATGAACGCCGGCGGCGGTGGTCCTTGCACAGCGGAGGACGGCGGCGCAGGGGTAATGTCGTGCGCGGAGGACGCGGAGTCTGCGTACGTTGACCCAGAGCGAGTGGCGGCGGCGGGTCCAAGGTGCCGAGGGTGCGAGAAACGCGTAGCGTCGGTGGTGGTGCTGCCATGTCGGCATTTATGCGTTTGCGGCGAATGCGAGAGGCATTTCCGTGCTTGCCCCGTTTGCCTCACCGTTAAAAATTCTACCGTTGAGGTTTTTCTTTCTTAG 924 0.5173 MMMAVQAQYPSNVLLLNNNTNNNNNNNNDLHDYSSLQPPPSIGRKRPREHQNPNAINEPPYQVIHQTHLHNHNLVSTGLRLSFSSLQPHQQQQALQLQQTSLNSSSSSSSLLSQQLASQIKQQRHEIDQFLQAQGEQLRRSLADKRQTHFRALLTAAEDTLARRLKDKEEEVQKATRRNAELEAQAAHLTAQAQLWQAKAKAQEATAASLQAQLHHAIMNAGGGGPCTAEDGGAGVMSCAEDAESAYVDPERVAAAGPRCRGCEKRVASVVVLPCRHLCVCGECERHFRACPVCLTVKNSTVEVFLS 307
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc120933g00003 307 MobiDBLite consensus disorder prediction 15 35 - -
Stsc120933g00003 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 307 IPR013083 -
Stsc120933g00003 307 PIRSF SBP1_RNase_bind 2 307 IPR017066 -
Stsc120933g00003 307 Pfam Zinc finger, C3HC4 type (RING finger) 259 296 - -
Stsc120933g00003 307 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 28 304 IPR017066 -
Stsc120933g00003 307 ProSiteProfiles Zinc finger RING-type profile. 260 294 IPR001841 -
Stsc120933g00003 307 MobiDBLite consensus disorder prediction 15 58 - -
Stsc120933g00003 307 Coils Coil 158 213 - -
Stsc120933g00003 307 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 242 306 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc120933g00003 Stsc-Chr120933 24238 25947 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120933g00003 254 294 C3H Transcription Factor Family AT3G06140 37.778 9.47e-06 44.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120933g00003 K19042 - gmx:100779548 278.485