Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120930g00006 ATGGCTTCTTCTTCTCTCACGGGAAAATCTAGAGTGGTTTCAACCTCAGTCCCTGACCCTAAGGGTCGCCAACCTCGGCCAAATGTAGGTGGTAGGAATTTCAAGGTCCTTGTGGAAAATGAACGGATTAAAGTTTCCAATCTGCTGATGAAATCTGTGAGAGAAGTAGGTACAACTTCGAGAAAGAGTGCTACAGTAGCTGGTAATCATAAGGGAGACTTCAAAAGTATGGATAAAAGCAATAGCAAATATGTTACTTCTGCAAATACAAATGTGAGAAAGGCATTGGCTGATGTTAGTAATGTTCAAGGAAACTCTGCAACAAATATTGGACGTGATAGCTCCAAAATCAAAGTTTTAGCAGGTTCAAACATCAAAAAAGGGGGTATCACCTTGAGGAAATCATCCACGGGAACAATGCAAAGAAACAGAAGCAATGATGTCCAGTCAGGTGCTCCAAAGAAAGAACTAGGCACAGATGTGAGACCAGCTTTAAAGGATCAGAAGGATAATGCACATGGTGGCCCATCAGTTATCACAAAACACAGGTTTGTGAAGAAGCCTATATTACCTACAAATCCAAGCAATTCAAGGAAATCCTTACCAATACCAAGGAAGTCCTTACCAGCACCAAGGAAGGTGTACAGAGCAGATGAAAGTGCTGGAAGTATTGTAACAGCAGAAGCACGAAGTTCTCTCCCATTTAAGGCAACAGCAAGTAGAAGAGTTAGTTTCCAGCTAACTAATGCAAGAAACAATGTGCGGAAGACACGAGTGAGTGATGGCTTTGCTCAAACGGGTCAATCCAAAGTTTTATATGGATCTTCAAGGAAGTCTATCATGCCTCTTAATCTTAAGACTAAAGTCATGGCTTCTAATTCTCGCATGACTTCAAAACCAAAACCCATATCAGGTCAGAAAAAATCACAATCAAATGCTGCAATATCATCTCAGGATGAGGAAGCACCTCCATTGCCTCTTCCAGTGAATGGTTTGGCATCAGTTTCCGATGATGCAAATCAAGGACGTGTTCCATCTGATGGAGAGAGCAACTCAGGAGTATATTTACCAGAACTCATTCCAACGAAAAAGTCAAGCCGCAGGAAATCTTATACAACTTCATTGATGGAAGGATCTAAGCTGCTCAAGCAAAGGTGTGAAGTTAGCGAGCAGGATAACCTACCAAATATAGATGATGATTGCAATCATTTAGAAGTACCTGAATATGTTGATGACATCTATCAGTACTATTGGGTTACTGAGGCACAAAATCCAGCTTTGGCAAATTACATGTCCAATCAGACAGAAATTACACCTTATATGCGGGGCATTTTGATCAACTGGTTGATTGAAGTCCACATGAAGTTTGATTTGATGCCAGAAACACTATATCTCACAGTGACATTATTGGATCAATATCTTTCCATGGTGAAAATAAAAAAGACAGATATGCAATTAGTTGGTCTTACAGCACTTTTGCTGGCTTCAAAATATGAGGACTTTTGGCATCCTAGAGTTAAAGATTTAATAAGCATCTCGGTTGAGTCATATACAAGAGATCAAATGCTTGAAATGGAGAAGCGTATTCTTAGGAAATTGAAATTTCGTCTTAATGCTCCTACTCCATATGTTTTCTTGGTGAGGTTTCTGAAGGCTGCACGATCAGATAGAAAGCTTGAACACATGGCATTCTTTCTGCTTGACCTATGCTTGGTTGAATATGAAACTCTAGCATTCAAGCCCTCATTATTATGTGCATCAGCTCTCTATGTTGCACGTTGCACTTTGCAAATTGAGCCGCCATGGACGCCATTGCTGCAGAAGCATGCACGCTATGATATTTCACAAATCAGGGATTGCGCCAACATGATATTGAATCTCCATAAAGCTGCCAATGTTGGAAAGCTAAAGGTTGCATATGAAAAGTACTCACGAAAGGAGCTACGTTTTGTTGCAGCAGTGAAACCGTTGGATAGCCTTCCCTTGTGA 1989 0.4057 MASSSLTGKSRVVSTSVPDPKGRQPRPNVGGRNFKVLVENERIKVSNLLMKSVREVGTTSRKSATVAGNHKGDFKSMDKSNSKYVTSANTNVRKALADVSNVQGNSATNIGRDSSKIKVLAGSNIKKGGITLRKSSTGTMQRNRSNDVQSGAPKKELGTDVRPALKDQKDNAHGGPSVITKHRFVKKPILPTNPSNSRKSLPIPRKSLPAPRKVYRADESAGSIVTAEARSSLPFKATASRRVSFQLTNARNNVRKTRVSDGFAQTGQSKVLYGSSRKSIMPLNLKTKVMASNSRMTSKPKPISGQKKSQSNAAISSQDEEAPPLPLPVNGLASVSDDANQGRVPSDGESNSGVYLPELIPTKKSSRRKSYTTSLMEGSKLLKQRCEVSEQDNLPNIDDDCNHLEVPEYVDDIYQYYWVTEAQNPALANYMSNQTEITPYMRGILINWLIEVHMKFDLMPETLYLTVTLLDQYLSMVKIKKTDMQLVGLTALLLASKYEDFWHPRVKDLISISVESYTRDQMLEMEKRILRKLKFRLNAPTPYVFLVRFLKAARSDRKLEHMAFFLLDLCLVEYETLAFKPSLLCASALYVARCTLQIEPPWTPLLQKHARYDISQIRDCANMILNLHKAANVGKLKVAYEKYSRKELRFVAAVKPLDSLPL 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120930g00006 662 MobiDBLite consensus disorder prediction 135 152 - -
Stsc120930g00006 662 Pfam Cyclin, N-terminal domain 412 538 IPR006671 -
Stsc120930g00006 662 MobiDBLite consensus disorder prediction 61 80 - -
Stsc120930g00006 662 Pfam Cyclin, C-terminal domain 540 654 IPR004367 -
Stsc120930g00006 662 CDD CYCLIN_CCNB1-like_rpt1 406 535 - -
Stsc120930g00006 662 FunFam putative cyclin-B3-1 isoform X3 536 661 - -
Stsc120930g00006 662 MobiDBLite consensus disorder prediction 135 160 - -
Stsc120930g00006 662 FunFam Cyclin N-terminal domain containing 2 427 535 - -
Stsc120930g00006 662 PANTHER CYCLINS 367 644 IPR039361 -
Stsc120930g00006 662 SUPERFAMILY Cyclin-like 540 660 IPR036915 -
Stsc120930g00006 662 MobiDBLite consensus disorder prediction 289 318 - -
Stsc120930g00006 662 MobiDBLite consensus disorder prediction 188 207 - -
Stsc120930g00006 662 MobiDBLite consensus disorder prediction 1 33 - -
Stsc120930g00006 662 SUPERFAMILY Cyclin-like 402 538 IPR036915 -
Stsc120930g00006 662 SMART Cyclin_C_2 540 657 IPR004367 -
Stsc120930g00006 662 Gene3D - 427 531 - -
Stsc120930g00006 662 SMART cyclin_7 447 531 IPR013763 -
Stsc120930g00006 662 SMART cyclin_7 544 626 IPR013763 -
Stsc120930g00006 662 MobiDBLite consensus disorder prediction 334 348 - -
Stsc120930g00006 662 Gene3D - 532 661 - -
Stsc120930g00006 662 MobiDBLite consensus disorder prediction 289 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120930g00006 Stsc-Chr120930 90926 100606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120930g00006 29 662 Core Cell Cycle Gene Families AT1G16330 42.000 7.95e-157 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120930g00006 K21777 - gmx:100808850 708.753