Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120930g00003 ATGGGGAGGGGGAAGATCGTGATAAGGAGGATCGACAATTCGACGAGCAGGCAAGTGACGTTCTCGAAGCGAAGGAACGGTTTGTTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGACGCTGAGGTTGGAGTTTTGATCTTTTCCAGCACTGGAAAACTCTACGATTTCTCCAGTACCAGCATGAAATCAGTAGTTGAAAGATACAACAAAACCAAAGAAGAACAAAATCATCTTGGGAGTTCCACCTCGGAAGTTAAGTTTTGGCAAAGGGAGGCGGCAATGCTAAGGCAACAACTGCTAAATTTGCAAGAGAGTCACCGGCAAATTATGGGAGAAGAATTATCAGGTTTGACAATCAAAGACTTGCAGAGTTTGGAGAATCAATTGGAAATTAGTCTTCGTGGTGTCCGTACAAAAAAGGACCAGCTTTTAATGGATGAAATTCAAGAATTAAATCGAAAGGGGAACCTCATACACCAAGAAAATGTGGAACTATATGAGAAGGTAAACTTAATCCGTCAAGAAAACATGGAATTAAAAAAGAAGAATATAGAAAATAGAAATCTAGCCATACAAGAGGATTCTGAAGTTCCTGCTGTGAGTCTCCAACTAAGCCAGCCACAACAAGAACACCATGAGACATGTTCGGGAGCAACAAAAATAGGCAGATTGCAGCTGCATTGA 687 0.4192 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVLIFSSTGKLYDFSSTSMKSVVERYNKTKEEQNHLGSSTSEVKFWQREAAMLRQQLLNLQESHRQIMGEELSGLTIKDLQSLENQLEISLRGVRTKKDQLLMDEIQELNRKGNLIHQENVELYEKVNLIRQENMELKKKNIENRNLAIQEDSEVPAVSLQLSQPQQEHHETCSGATKIGRLQLH 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120930g00003 228 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Stsc120930g00003 228 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Stsc120930g00003 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc120930g00003 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc120930g00003 228 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc120930g00003 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc120930g00003 228 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Stsc120930g00003 228 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Stsc120930g00003 228 Coils Coil 163 195 - -
Stsc120930g00003 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc120930g00003 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc120930g00003 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc120930g00003 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc120930g00003 228 Coils Coil 86 106 - -
Stsc120930g00003 228 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc120930g00003 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120930g00003 Stsc-Chr120930 65800 77281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120930g00003 1 219 MADS-box Gene Family AT4G37940 60.177 1.24e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc120930g00003 K-box 5.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120930g00003 K09264 - gmx:100812413 356.295