Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120929g00007 ATGGAAGGAGGAAGATCATCATCATCATCATCAATTTCTAATGGCAATGCAGAAGTAAGGTATAGAGGGATTCGTAGGAGGCCGTGGGGAAAATTTGCAGCGGAAATTCGTGACCCTACGAGAAAAGGGACACGAATATGGCTTGGAACATTTGAAACCGCTGAAGAAGCTGCAAGGGCTTATGATGCTGCTGCTTTTCATTTTCGTGGCCATAGGGCTATACTCAATTTCCCAAATGAGCATCAAGCTCCTATTAACCCTAATTCGCCGCTACCTTTGCCTCTTCCTGTTCATTCTCCTCCAGATTCTGCTCCTCATTCGAATGCGAGTGCATACAATTCGTATTCGTGTTCGAACGAGGGAACGATGCAGGGTGACTATAGTCATGATGGTGCTTTGGAGTTGGAATATTTTGACAATAAGTTGTTGGAAGAACTTCTTCAAGATGATGATAGGCAAATGTACCAGTTCAACAATCATACACTATACAGATGA 495 0.4323 MEGGRSSSSSSISNGNAEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFETAEEAARAYDAAAFHFRGHRAILNFPNEHQAPINPNSPLPLPLPVHSPPDSAPHSNASAYNSYSCSNEGTMQGDYSHDGALELEYFDNKLLEELLQDDDRQMYQFNNHTLYR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120929g00007 164 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Stsc120929g00007 164 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Stsc120929g00007 164 SMART rav1_2 20 84 IPR001471 GO:0003700|GO:0006355
Stsc120929g00007 164 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Stsc120929g00007 164 PANTHER DNA-BINDING DOMAIN 14 150 IPR044808 GO:0003700|GO:0009873
Stsc120929g00007 164 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Stsc120929g00007 164 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Stsc120929g00007 164 Pfam AP2 domain 20 71 IPR001471 GO:0003700|GO:0006355
Stsc120929g00007 164 ProSiteProfiles AP2/ERF domain profile. 20 78 IPR001471 GO:0003700|GO:0006355
Stsc120929g00007 164 FunFam Ethylene-responsive transcription factor 2 19 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120929g00007 Stsc-Chr120929 85559 86064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120929g00007 16 153 AP2-EREBP Transcription Factor Family AT3G23230 50.725 9.97e-38 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc120929g00007 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120929g00007 - - aip:107628225 213.001