Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120929g00003 ATGACATTTGGGTTAGTGTACACAGTTTATGGCACAGCAGTGGATCCAAAGAAAGGGAATATAGGGTTTATAGCCCCAATTGCAATTGGACTCATTGTGGGTGCAAACATCTTAGTAGATGGACCATTTCATGGTGCATCAATGAACCCAGCTGTGTCATTTGGTCCTGCTATTGTTCGTTGGTCATGGACTCATCATTGGATCAATTGGGTTGGTCCCTTCATTGGTGCTGCCATTGCTGCCATTATGTATGATAATATCTTCACTGAAACCGCAGTAGTGAAGGGAAAGCCTAATGCCATGGGATGA 309 0.4369 MTFGLVYTVYGTAVDPKKGNIGFIAPIAIGLIVGANILVDGPFHGASMNPAVSFGPAIVRWSWTHHWINWVGPFIGAAIAAIMYDNIFTETAVVKGKPNAMG 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120929g00003 102 Gene3D Glycerol uptake facilitator protein. 1 97 IPR023271 -
Stsc120929g00003 102 PRINTS Major intrinsic protein family signature 30 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120929g00003 102 PRINTS Major intrinsic protein family signature 67 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120929g00003 102 Pfam Major intrinsic protein 1 84 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120929g00003 102 SUPERFAMILY Aquaporin-like 1 90 IPR023271 -
Stsc120929g00003 102 PANTHER AQUAPORIN-8 1 90 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120929g00003 Stsc-Chr120929 42134 42685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120929g00003 1 88 Major Intrinsic Protein MIP AT4G01470 82.955 2.54e-46 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120929g00003 K09873 - gmx:100788583 164.466