Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120929g00002 ATGAGTTGCTTCATGTGGATGATAGAAAAGGAACAACTTCTTTGGGTGCCAGGTGCCAGCAGCAACAATTTCATGGATTGGGATTGGAAAATGGTGGACAGTAGTGTCGTTACCTTTGTTCTGGCCAACTTGTCACGGCTAGTTGATAGTGAAGTGACAATTCTTTCAGGCGTGAAGGATCAAATCAGGTCCCTAAGTGATGAACTGAAGTTCATGAACATCTTCATCAAGAGTTCTGAGGGAAAGCAACATGATTCGGTGGTGAGAGAAGTGGTGAACCAGATCAGAGACGTGGCATATGAAGCTGAAGATGTGGTAGACAGCTATGTCATCAATGTCAACAAGCAAAGAAGCAGAAACATGTTGAGCAAGTTCTTCCACGTCAAAGACCATGTGATGATGCTTCATGAGGTGAATGCACAGATGCAAGACATCAAGAGTAGGATCGATGAGATCTATCAAAACAAGTCCAAATATGGCATCCAACAAGGTGATTTTCAAAGTCCTACTCAAAACAAGGATTTTGCAAGAGACTTATTGCTTGCTAGAAGGAGGGATGTGGAAGAAGAAGAGGTAGTGGGCTTGGTGCATGACTCCAACGAGGTGATTAGCCAACTTGAGAGAGGATATTCGAGTCGCAGAGTTGTTTGCATATCAGGCATGGGTGGTTTGGGAAAGACCACTCTTGCTCGAAAGATCTACAACAACAAGAAGATCAAGAGCATGTTCCCATGTTGTATGTGGGGTTTAGGGTCCAACGATTTCAGAGCTCAAGAATTATATATGAACCTTTTGAAGCTTTTGGATTTACCTGCAGAGGAGTTCAAAGATTTAACTGATCAAGAGAAAATGAAAAGAAAAGTCAGAGAATGCATGAGTGGAAAGAAATACCTGCTAGTGTTAGACGACATTTGGAAAACTCAAGTGTGGGACGAGTTGCAAGAAGCCTTTCCTGATGACAACAATGGTAGCAGAATATTGATAACCACACGTGTGGAGGAGATTTCTTATTATACAAGAGCAACCTTCACATACAGACTCCCATTTCTTGATCAAAGTCAAAGTTGGGAACTTTTCTGTAAGAAGGTGTTTTGCAAAGAAAAATGTCTTCATGAACTTGAAACTCTTGGCAGAGAAATGGCTAATGCCTGCAAAGGTTTGCCACTTGCCATCGTTGTGTTGGCAGGTATAGTTGCAAAGAAAGAGAGGTCACCAAGAGAATGGCATAAAATCAAGAATCATGTTTCTTGGCACTTTGATCAAGAGGGCTATAGAACTGTGAGTGATATTCTGAAGCTTAGCTATGATGACCTTCCTCAAGCATTGAGGCCATGTTTTCTTTACTTGGGGGTGTATCCTGAAGGGTTCATTCAAGCAAACGAAGTTGGGCCATCCAATTCACCGGAATTAGAAGATATTGCTGACATGTACTTAGATAAGCTAGTGGAACGGAGCTTGGTGCAAGTGGCAAGTAGGAGGAGTGACGGGGGTGTGAAGACGTGTAGAGTCCATGATCTTCTCCGTGACCTCTGCATTTTAGAGAGCAGAGAAAATAAGTTTATGGAAGTGTGCAGGGAGTTGGATACTAGCAAATGCAATCCTCGTAGGATGTCTCTCCAGTATACAAGAACTCAAATTTGGTCAAGCGAAAAAGGCCAATCACATACTCATACGCGCTCTTTGCTCCTTTTTGGTGAATGGATTAAAGACCAAACAAAAGGGTGGAGTCAGGTAAGGAATAACTTCAAGTTGGCTCGTGTATTGGACATGAATCGAATGGTGTTATATTCATCACCTAGTGGATTGAAGACATTGATCCATATAAGATACTTGAAAGTGAAAATAGACATTTTTAGAGTTGCAAATGATGTTTTGACTTCTGTATGCAATCTTTGGAATCTAGAAACACTATATTTATGGGTTGATAGACCTGAGGGTTGGGGTGATTCTTTTATTCTACCAGCCAAATTATGGAAGCTCAAGTCACTAAGGCATATTTATTTAAAATATGATAAGGTATTTCTATTATCACCATCATCATTTATTGCAGGAGTATCAGTGTCGAAGATGAAAAATGGAGAAACAAGGGTGGAGAATCTCCAAACTCTCTGTAATATCCATCTCTATACACGAGTAGCAAACATCCTAAACGAAGGTATGTTTTCCAACTTGAAAAAATTAACTTTATGTGGAACGAAGGAGGGAAAGCAAGAAGAAGAAGAAGAATTACTAGGGAAAGCTCTCCAATGCCTAAACAAACTTGTTACACTAAAGCTAATTGCCATATGGGAGATTCCATTAGATCCCAATGTGTTTCCTACAAGTCTTACCAAGATTACCATCAAAGGCTTTTTTGAAAAGGATTCAAGATTTATCAAGACTTTGGGACAACTTCCCAACCTCCAAATCTTGAAATTATGCTACGGAAAGATACTAGAAGATGTTAATTGTGCAGCTGGGGACTTCCCACAGCTTCAATTTCTACATGTGGAAGCGGGATATAGTCACCTTCCCGGTAACACTGGTAGGTGGAAAATAGAGCAAGGAGCAATGCCTCACATTCAACATTGTTTTTGCAACATCTCTTCTCAAGACATGGACAGACTTGGCATTCGACATTACAAGACTCAGACTCGGACTCGGACATGA 2649 0.4081 MSCFMWMIEKEQLLWVPGASSNNFMDWDWKMVDSSVVTFVLANLSRLVDSEVTILSGVKDQIRSLSDELKFMNIFIKSSEGKQHDSVVREVVNQIRDVAYEAEDVVDSYVINVNKQRSRNMLSKFFHVKDHVMMLHEVNAQMQDIKSRIDEIYQNKSKYGIQQGDFQSPTQNKDFARDLLLARRRDVEEEEVVGLVHDSNEVISQLERGYSSRRVVCISGMGGLGKTTLARKIYNNKKIKSMFPCCMWGLGSNDFRAQELYMNLLKLLDLPAEEFKDLTDQEKMKRKVRECMSGKKYLLVLDDIWKTQVWDELQEAFPDDNNGSRILITTRVEEISYYTRATFTYRLPFLDQSQSWELFCKKVFCKEKCLHELETLGREMANACKGLPLAIVVLAGIVAKKERSPREWHKIKNHVSWHFDQEGYRTVSDILKLSYDDLPQALRPCFLYLGVYPEGFIQANEVGPSNSPELEDIADMYLDKLVERSLVQVASRRSDGGVKTCRVHDLLRDLCILESRENKFMEVCRELDTSKCNPRRMSLQYTRTQIWSSEKGQSHTHTRSLLLFGEWIKDQTKGWSQVRNNFKLARVLDMNRMVLYSSPSGLKTLIHIRYLKVKIDIFRVANDVLTSVCNLWNLETLYLWVDRPEGWGDSFILPAKLWKLKSLRHIYLKYDKVFLLSPSSFIAGVSVSKMKNGETRVENLQTLCNIHLYTRVANILNEGMFSNLKKLTLCGTKEGKQEEEEELLGKALQCLNKLVTLKLIAIWEIPLDPNVFPTSLTKITIKGFFEKDSRFIKTLGQLPNLQILKLCYGKILEDVNCAAGDFPQLQFLHVEAGYSHLPGNTGRWKIEQGAMPHIQHCFCNISSQDMDRLGIRHYKTQTRTRT 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120929g00002 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 449 IPR027417 -
Stsc120929g00002 882 CDD RX-CC_like 35 152 IPR038005 -
Stsc120929g00002 882 Gene3D - 36 152 - -
Stsc120929g00002 882 FunFam Probable disease resistance protein At1g61300 180 342 - -
Stsc120929g00002 882 Gene3D - 349 439 IPR042197 -
Stsc120929g00002 882 Gene3D - 169 341 IPR027417 -
Stsc120929g00002 882 Pfam NB-ARC domain 200 437 IPR002182 GO:0043531
Stsc120929g00002 882 Pfam Rx N-terminal domain 36 126 IPR041118 -
Stsc120929g00002 882 Coils Coil 135 155 - -
Stsc120929g00002 882 PANTHER DISEASE RESISTANCE PROTEIN RP 63 837 IPR044974 GO:0006952
Stsc120929g00002 882 Gene3D Ribonuclease Inhibitor 533 857 IPR032675 -
Stsc120929g00002 882 PRINTS Disease resistance protein signature 215 230 - -
Stsc120929g00002 882 PRINTS Disease resistance protein signature 291 305 - -
Stsc120929g00002 882 PRINTS Disease resistance protein signature 384 398 - -
Stsc120929g00002 882 PRINTS Disease resistance protein signature 796 812 - -
Stsc120929g00002 882 SUPERFAMILY L domain-like 503 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120929g00002 Stsc-Chr120929 38418 41854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120929g00002 214 510 WRKY Transcription Factor Family AT5G45050 24.921 2.14e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120929g00002 - - aip:107635641 1072.38