Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120926g00002 ATGTTCTTCCGCAAGACATCCGTTGCCAGGCTTTCTATGGATGCCTTTCCATTCAGCCCCTTTCATTTCAGCCACTTTCCTGGGGTTGCGGAAATGACAGCAGCTCGCCAGTTTCACCTCATAGATTGCTTAGGACACGTTGTTGGAAAGGAGGATGTTGTGGATATGGTCACTCGAAACGGCGATGCGACCAAAATGATGGCTATTTACTTGGAGGATTTAGAGGGAAGAAAGATGAAGTGTACCCTGTTTGGAGAGGAAATGATAAGCCAATTCAACAATTACATAGTCCGAAGTAATGGTGAGCCTGTTATAATGGTTGCTCAGCTTTTCAAGCCTAACTTTTATCTGAATGAAACTAGCATTCAAAGCACATTCAATTCATCAAGGATTCTGTTCAATCCAAACTTTCCTGAAGTTAAGCAGTTTAGGGAAAGAGTCCTTACATTCACTTATGCATATCCGTTTTTAATCCGTATATTGGCGCTTGGGGATATAGCAACCCAGGGGATTGCTGATGTGCCAACCCAGTCACAGAATTCCGCAAGTGTTGAGCTTGCTGGTGGAGCAATTTGCAATGAGACTATTGAGTCAGTCATGAATATGCATCAGGAAAAACATTGTTGGGTGTTGGGTACTGTTGTTTCCATTAATTGTGGCCCAAAGGGTTGGTATTATGCGTCATGTAAGAACTGTTATAAGAAGGTTGAGGACAAGAAGGATCTCTACAAATGTGCAAATTGTCACCGGCTTGGGTCAAAGCCACCTCTAAAGTACCGGCTAAATGTCATAATAGCAGATGGAACTGGCTGTCTAAATATTCTTTTTTGGAATAGTGAGGCAACAACAGTGTCGGGCAAGACGGCTAGAGAAATGAAAGATGCTAATCCAGATTTAGACGGAACGGGCTACCCTAAAATGTTTGACTCTCTATTGGAAAAAAAAGTATTTGCTGAAGATATCCGTGGAGGAGAAAAACATTACCAATGTGGATCAGGTTTACAGTGTTTTGAAGGTTAG 1020 0.4216 MFFRKTSVARLSMDAFPFSPFHFSHFPGVAEMTAARQFHLIDCLGHVVGKEDVVDMVTRNGDATKMMAIYLEDLEGRKMKCTLFGEEMISQFNNYIVRSNGEPVIMVAQLFKPNFYLNETSIQSTFNSSRILFNPNFPEVKQFRERVLTFTYAYPFLIRILALGDIATQGIADVPTQSQNSASVELAGGAICNETIESVMNMHQEKHCWVLGTVVSINCGPKGWYYASCKNCYKKVEDKKDLYKCANCHRLGSKPPLKYRLNVIIADGTGCLNILFWNSEATTVSGKTAREMKDANPDLDGTGYPKMFDSLLEKKVFAEDIRGGEKHYQCGSGLQCFEG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120926g00002 339 Gene3D - 15 151 IPR012340 -
Stsc120926g00002 339 SUPERFAMILY Nucleic acid-binding proteins 200 315 IPR012340 -
Stsc120926g00002 339 Gene3D - 183 329 IPR012340 -
Stsc120926g00002 339 Pfam Replication factor-A C terminal domain 221 297 IPR013955 -
Stsc120926g00002 339 CDD RPA1_DBD_B_like 42 147 - -
Stsc120926g00002 339 SUPERFAMILY Nucleic acid-binding proteins 37 147 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120926g00002 Stsc-Chr120926 8262 11705 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120926g00002 1 292 Core DNA Replication Machinery Family AT2G06510 22.756 1.55e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120926g00002 - - ahf:112695129 285.804