Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120925g00007 ATGGGAGGAGTTGGTGCGTCCTCTGTCAGTGCGGAAGATGAGCCCGGCCGTCAGGACGATGCGCGATTCTGCCGAAGCGGAGAAGTGGCCACTGGATCGGGTAGGAGCATGGGAGACGAGATGGATGGGGAAGGCCATTGTCTTTCAGACCCACTATCAGGGCAATGGAGTAATGGATGCAGCAACGATACGGAGGACGAGGAGGTATGTACGGAGTCAGAGCCACTACATATAGGGGAAGAAGATACAAGTGCGGGGGAAGATTGCGGCATGGCAAATCCAAAGGAGTCACCGGTGACTTACAATAATGTGACCAGTAATGGTGAGCCGAGCTCAGGTGTGTCACGAGAAGCTGAACTGGCTGTAGCTGAGTTTGATGGAGTTGATGAGGCATACAGAAGATACGTGGAATATGCAAAGGCCACAGGATTTGCTGTCCGAAAAGGGGATAACGTTAAAGATGAGGAGGGGAATCTTGTGAGGAAATTCTTCTACTGCAACCGACAAGGTTTCAGGGAAAAGAAGCACTACGAAAGGGTGGACCGGAAGAGGGCTCATAAACCAGAGACAAGGACCAATTGCAATGCGAAGCTGGTGATCTCCTTCGAGAAAGGTAGTGGGAAGTGGAGGGTGAAGACGTTTGTGCAAGACCATAATCATGAACTGTTTCCATCGGCCTTTACCAATGTCATGGCTGCCCATCGCAGCATCAATGACGGAGCGAAGGCTCACACACATAGCATGAACAATGCTGGCTTCCAAACGAGTCAGATAATGGGGTCCTTTCCATTCTTGTCTGGAGGGATTTGTAACTTGCAATTCGAGAAGAAGGATTTGTATAACTATATTGATGAGGTTAGGAGTTCTCGGATTGTTGAGGGTGATGCTGCAGCAGCAATAAGCTACCTGAAGGGGAAGGCGGAACTAGACCCTTTAGCTGTCGTTGTGTACACATATTGTTCGGAAAACCGCTTAGGTCACTTGTTTTGGTCAGACGGTACCATGCAGTTTGATTACGAATGCTTTGGCGATGTGTTAGCATTCGATTTGACATATAGGAAGAATTGTTACAATAGGCCGTTGGTGATATTCTCGGGGACTAATCACCACAGACAAACTACTATTTTCGGATTCGGGTTGCTAGAGGATGAGAAGATTTCCTCCTATAAATGGTTGTTAAGCACATTCCTGCAGGTTATGCGGCAAAAGCAACCCAAAGTTGTGGTCACAGATGGAGATGAGCAGATGAAGGAGGCTATTAGAACCGAGTTCCCTAACGCGACACACAGACTTTGCGCATGGCATCTAGCACTGAATGCTGCTTCAAACATCAAGAATGGTGATTTCAGTGTTGCATTCAAGAAGGCTGTGTATGGGCTCTTTGATGTGGAAGAGTTTGAGCAATACTGGGCAGAGATTGTGTCTAAGTTTGGATTAAAGCAGAACGAATGGATTTGTGGAACATACGAGAAGCGGGAGCATTGGGCGAATGCCTATTTGTGTGACAAGTTCTGTGCTGGCCTGCTCACAACCTCCAGGTGCGAGGGCATTAATTCATTCCTGAAGAAATTTATAAAGTCTGGTAGTTGCCTGTTGGAACTTGTGGAGAACCTAGATCGTGTCGTTAAGGATTATAGGAACAACGAGCTTATTGCGGACTATAAATCTCTATATTCAGAGCCGGTTATGGAAACAGGTCTGCAATCAATTGAAAAGGTTGTCTCTAAGTTGTATACGAGGGAGATATTCTTTCAGGTGCAGAAACAGATCAAGGGCGTGGCTGCGTTGTTAGTTCCTCACAGGGAGAGCCATGGAGGCTCTGAGAAGTTCATGCTGCGGAAGTTTCAATCTCATCGGGTTTATACAGTGCTATATCATCGTAGTTGTGAATCATACGAGTGTTCTTGCAAGTTGTGGAACAGCCTCGGGATTCCTTGCAGCCATATATTCTGCGTTCTGAAGGAGCTGGATAAGGACGAGTTGCCGAAGCGATTGGTGCTGAAGAGGTGGTGCAAGGACGCGAAATCAGGAGCATTCTACTCTTCAGACGGGGTAGTTGACCCAGATCGAGCCTTTCGCTATCGATATGGTTCCCTTTCTAGTACCTGCATCTCGATGTGCTTGTTGGCGGCTCAACGGCCGGAAACCTATGAGAATGCACTTGGCAGAATTGGAGACATGTTGAAAGAATTTAAAACTGTCCTTCCCAATGGAGATAGGGGGAAAGGTGGGCATGGACATCCAGATTCTTGTGATATTCTTGATCCAAAGGTTGTACGATCAAAGGAAGCTCCTCCAGGTGGAAGCAGTTCGAAGCCAGGCAGGCGGTGTAGGAGGTGCTTCGCACTTGGGCACGATCGATCGATATGCAATGCCGGCGGTGATGATGCCTGGGATGAGGTCACAGGGTCTAGCGAGGGAGGAGGGAAGCGTGTCAGGCGTTAA 2445 0.4802 MGGVGASSVSAEDEPGRQDDARFCRSGEVATGSGRSMGDEMDGEGHCLSDPLSGQWSNGCSNDTEDEEVCTESEPLHIGEEDTSAGEDCGMANPKESPVTYNNVTSNGEPSSGVSREAELAVAEFDGVDEAYRRYVEYAKATGFAVRKGDNVKDEEGNLVRKFFYCNRQGFREKKHYERVDRKRAHKPETRTNCNAKLVISFEKGSGKWRVKTFVQDHNHELFPSAFTNVMAAHRSINDGAKAHTHSMNNAGFQTSQIMGSFPFLSGGICNLQFEKKDLYNYIDEVRSSRIVEGDAAAAISYLKGKAELDPLAVVVYTYCSENRLGHLFWSDGTMQFDYECFGDVLAFDLTYRKNCYNRPLVIFSGTNHHRQTTIFGFGLLEDEKISSYKWLLSTFLQVMRQKQPKVVVTDGDEQMKEAIRTEFPNATHRLCAWHLALNAASNIKNGDFSVAFKKAVYGLFDVEEFEQYWAEIVSKFGLKQNEWICGTYEKREHWANAYLCDKFCAGLLTTSRCEGINSFLKKFIKSGSCLLELVENLDRVVKDYRNNELIADYKSLYSEPVMETGLQSIEKVVSKLYTREIFFQVQKQIKGVAALLVPHRESHGGSEKFMLRKFQSHRVYTVLYHRSCESYECSCKLWNSLGIPCSHIFCVLKELDKDELPKRLVLKRWCKDAKSGAFYSSDGVVDPDRAFRYRYGSLSSTCISMCLLAAQRPETYENALGRIGDMLKEFKTVLPNGDRGKGGHGHPDSCDILDPKVVRSKEAPPGGSSSKPGRRCRRCFALGHDRSICNAGGDDAWDEVTGSSEGGGKRVRR 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120925g00007 814 SMART 26again6 632 659 IPR006564 GO:0008270
Stsc120925g00007 814 MobiDBLite consensus disorder prediction 742 759 - -
Stsc120925g00007 814 MobiDBLite consensus disorder prediction 790 814 - -
Stsc120925g00007 814 PANTHER OS01G0519700 PROTEIN 107 766 - -
Stsc120925g00007 814 MobiDBLite consensus disorder prediction 1 97 - -
Stsc120925g00007 814 Pfam FAR1 DNA-binding domain 135 224 IPR004330 -
Stsc120925g00007 814 MobiDBLite consensus disorder prediction 739 776 - -
Stsc120925g00007 814 Pfam MULE transposase domain 345 437 IPR018289 -
Stsc120925g00007 814 ProSiteProfiles Zinc finger SWIM-type profile. 621 657 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120925g00007 Stsc-Chr120925 48920 55061 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc120925g00007 MULE 4.7e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120925g00007 - - adu:107470907 953.355