Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120923g00014 ATGGGGCTAATTAAAAAGCCACCAAACCAACCCGAACCCAAGAGCGGCCCTCAGCCCTACTTGGTGTACGATGTTTTCTTGAGCTCCGCCGGAAGGGGAAACGCGGAGTCAATGAGATACACAAAATGCCTCTATTATTCTCTTGAAAAGGCAGGGTTCTCTGTTTTCTGGGATTACGGTGGTGGCTCGAATATGGACCTGCTGGAGCTCATGCTTCAATATCGCAGAAACGCCGGCCAGTTCACTCTGCCGGTTTTCTTGGGTGTCACTCCCGGAGATATTCGAAAAGCTTTTGCTGATTTCACAAAGAGAATCTCTGAGAAAGATAAGGTAGAGTGTTGGAAGGTAACTTTGTCTCGAATCTGTCAAATCCAATCCTACCAATGGGTTTACCTCAACAACAATCATCAATGGAGTGACAATGATATGCATATCAGGAATGTTGTGGAACATGTTGGAGGCTTGTTGAACGGAAGAAACTTGTTTCTTGCCGAGTTTGAAGTGGAAGTAGGATACCGAGTGCAAGAAGCCACTAAACTGTTAGTCCACTCAAAATCAAAGGAGGTTCTTCTACTTGGGATATGGGGAATGGTGGGTATTGGAAAAACAACAATTGCCAAAGCCATTTATAATGAAAATAGCAGAAAATTTGAGGGTAGAAGCTTTTTGGCAAATATTAGGGAATTATGGGAGGAAAATACTAATCATGTTTATTTACAAGAACGTATTCTTTTCGATATCTTCGACTTACCTACAATAAGCATAGATAACATCGAAATTGGAAAAAAGATGCTAAAGAAAAGGCTTTCTCGTAAAAAAATTCTTCTTGTACTTGATGATGTGAATAAAAAGGAGCAGTTGAATGCCTTGTGTGGAAGTAGTGAGTGGTTTGGTCCTGGGAGTATGATAATAGTCACGACAAGAGATAGAAGTCTACTTCAGGATCATGGAGTTGACCATGTGTATACAATGAAAGAAATGAAAAAGAATAAATCTCTAGAGCTTTTTAATCGGTATGCATTCAAAAAGGCAGCTAATAAGCAATATCTTGATGAACTTTCTGAAGATGTAGTTGCTTATGCTGGAGGATTGCCACTAGCTTTGGAAGTCCTTGGCTCCAGACTTCTCGGAAGCTTGGATAGTATTCCTGATGGACTCATAGATTCTCCTCATCCTGTGCTACAAAAGGTTCTGAAAAAATGTGTGGAAGATTTAAATGATATGGAGAAAGCCATATTCCTTGATATAGCTTGTTTCTTAGTAGGGATGGATCAAGAAAAGGTTATCCAAGCATTAGCTGCCTTTGGAGACTTGGCCAAAGATGGAATAAAAGCCCTTGAGGATCAATGCTTCATAACATTTGATGAGATGAACAAACTCAGAATGCATGTTTTGCTACGAGACACGGGAAGAGAAGTCATTTGTGAGCAAAAGGGAGGAGATCCTGCGTCATGGATCTATGATGTGTTCTTGAGTTTTAGAGGAGAAGAAACTCGTGCCACATTCACCTCACATCTCTATACTTCTCTCGTAAATGCTGGAATTTATGTCTTTAGGGATGATGATGAGATACGTAGGGGAGATCGAATATCTGTCTCACTACTGCAAGCAATCAGAGCATCTAGAATTTCTGTGGTTGTGCTGTCAAGGAATTATGCAAATTCAAGGTGGTGTCTGCAAGAGCTGGAGAACATAATGGAGTGTCGCAGGGCCATAAGTCAGGTGGTTGTGCCTGTTTTTTATGGTGTAGATCCCTCTGATGTGAGGAATCAAACTGGTCTATTTGGAGAATCTTTTCAAGATCTTTTAAAAAGATTTTCAGTGGATAGAGAAAGGGAGAAGAGGTGGAGAAAAGCGCTTTATCAAATTGGTTCCATTGCAGGAATTGTGATCATAGATTCCAGGTAA 1908 0.4067 MGLIKKPPNQPEPKSGPQPYLVYDVFLSSAGRGNAESMRYTKCLYYSLEKAGFSVFWDYGGGSNMDLLELMLQYRRNAGQFTLPVFLGVTPGDIRKAFADFTKRISEKDKVECWKVTLSRICQIQSYQWVYLNNNHQWSDNDMHIRNVVEHVGGLLNGRNLFLAEFEVEVGYRVQEATKLLVHSKSKEVLLLGIWGMVGIGKTTIAKAIYNENSRKFEGRSFLANIRELWEENTNHVYLQERILFDIFDLPTISIDNIEIGKKMLKKRLSRKKILLVLDDVNKKEQLNALCGSSEWFGPGSMIIVTTRDRSLLQDHGVDHVYTMKEMKKNKSLELFNRYAFKKAANKQYLDELSEDVVAYAGGLPLALEVLGSRLLGSLDSIPDGLIDSPHPVLQKVLKKCVEDLNDMEKAIFLDIACFLVGMDQEKVIQALAAFGDLAKDGIKALEDQCFITFDEMNKLRMHVLLRDTGREVICEQKGGDPASWIYDVFLSFRGEETRATFTSHLYTSLVNAGIYVFRDDDEIRRGDRISVSLLQAIRASRISVVVLSRNYANSRWCLQELENIMECRRAISQVVVPVFYGVDPSDVRNQTGLFGESFQDLLKRFSVDREREKRWRKALYQIGSIAGIVIIDSR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120923g00014 635 Gene3D - 482 635 IPR035897 -
Stsc120923g00014 635 Pfam NB-ARC domain 173 375 IPR002182 GO:0043531
Stsc120923g00014 635 Pfam TIR domain 487 621 IPR000157 GO:0007165
Stsc120923g00014 635 PRINTS Disease resistance protein signature 191 206 - -
Stsc120923g00014 635 PRINTS Disease resistance protein signature 361 375 - -
Stsc120923g00014 635 PRINTS Disease resistance protein signature 268 282 - -
Stsc120923g00014 635 SUPERFAMILY Toll/Interleukin receptor TIR domain 22 120 IPR035897 -
Stsc120923g00014 635 ProSiteProfiles TIR domain profile. 485 635 IPR000157 GO:0007165
Stsc120923g00014 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 416 IPR027417 -
Stsc120923g00014 635 Gene3D - 63 157 IPR035897 -
Stsc120923g00014 635 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 67 479 IPR044974 GO:0006952
Stsc120923g00014 635 Gene3D - 165 320 IPR027417 -
Stsc120923g00014 635 Gene3D - 326 411 IPR042197 -
Stsc120923g00014 635 SUPERFAMILY Toll/Interleukin receptor TIR domain 482 628 IPR035897 -
Stsc120923g00014 635 SMART till_3 486 626 IPR000157 GO:0007165
Stsc120923g00014 635 FunFam Disease resistance protein (TIR-NBS-LRR class) 483 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120923g00014 Stsc-Chr120923 73648 76925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120923g00014 181 474 WRKY Transcription Factor Family AT5G45050 33.000 8.79e-46 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120923g00014 - - adu:107475204 1036.17