Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120923g00013 ATGCTTGACGATGTTGATGAATTAGACCAACTAAAAGCTTTGTGCTGGAGCCGTGAATGGTTTGGTCCAGGGAGTAGAATAATCATCACAACAAGAGATGAAAGTCTACTTAGAGTGCTTAATGTTGACCACGTATCTAGAATGTCAGAAATGGATGATGATGAATCTGTTGAGCATTTTTGTTGGCATGCATTCAAACAATCAAGTCCCAAAGAAAATTTTGATGAGCTTTCCAAAGATGTGGTTGCGTACAGTGGAGGATTGCCGCTAGCTCTTGAGGTCATTGGATCTGTTTTGTTTGATAAGAATGTAAAAGAGTGGGAAAGCCTCTTGGAAAAACTCAAAAAAATTCCAAACGATAAAGTACAGAAAAAGCTAAGAATAAGTTTTGACAGTTTAAACGATGACACAGTGAAAGAAATATTCCTTGACATAGCTTTTTTCTTTATTGGGATGGATCGGAATGATGTAGTACATATCTTAGATGAATATGATGCTGAAATTGGAATAAATGTTCTTGTTGATCGGAACCTTGTGACTATTGATAGCAATAATAGGCTTGGAATGCATGCCTTGTTACGAGATATGGGAAGAGAAATAGTCCGTGAGAAATCACCAAAAAAGCTAGAGAAGCGAAGCAGGTTGTGGTTGCAAAAAGAAGTATTTGAAGTATTACAAACACACACTGGTACTAAAGCTATTGAGGGACTGACTTTAAAGTTGCCAAGAAGCAATGCAATTTGTTTGGAGACAAAAGCATTTAATAAGATGAAGAGACTGAGGTTGCTGCAACTTGCTAGTGTACAACTTGATGGAGATTTTGAACACATGTCAAAAGATATAAGATGGGTTTGTTGGCATGGATTTCCTTACAAGTACATACCTTCCAAATTTTATCAAGCAAGTTTAGTTGCTATGGAGTTAGAATTCAGTAGTCTCAGATTCATGTGGAAGGAGGCCCAGGAAGCACTAGGACTAGGGAACATACTTGATATAAGAGTTTATGTGGATATAAATAGTGGGATTGTGATAATGGGGGTGGTGATTGTTCTGAGATGGAGAGGAACAAAGAGGGGAAAGGAAAGGGAAACAGGAAGAATAGAATGCGACGGTGGTGGTGGTGGTGTAGTGATGTTCTTGGGGATGCTTAAGGTTCTCAATCTTAGTCATTCTTATCACTTGATCCAAACTCCGGACTTCTCATACTTGCCTAATCTCGAGAAGCTATTACTCAAAGGTTGTTCAAGTTTGTCTATGATTTCAGATACAATTGGACATCTCAAAAGAATTCTTCTCATAGATTTGGAAGATTGCACAAGCCTTCCTAACCTTCCTAGAAGTTTTTATGAGTTGAAATCCTTGATAACTCTCATCATTTCTGGGTGTTCATTAATTGACAAATTGGAAGAAGACTTGGCACAAATGAAATCCTTGAAAAAACTGATTGCAGATAAGACTGCAATAACACAAGTGCCATTTTCAATAGTAAGATCCAAAAGCATTGGATATATCTCCTTGTATGGCTACGAAGGATTTGTGCGTGATGTGTTTCCTTCTCTCATTTGGTCTTGGATGTCACCAACAAATAACCCTTCATCCTTAGTACAATCATTTGCTGGTTTGGAAACTGTCTCTTTAGATGTATTAAATCTTCGAAGGTTTTGGGTTGAGTGTGGCACAGATCTTCAGCTAAGTGGAGGTGTAGCAAAAATTCTGGATACTTTGTATGCCACATACTACAAGGAATTAGAACTAACGCCAACTACATCACAAGCCTCACAAATCAGTAGTTCATCCTTGATTGACTTTCATAGTCAATTTCGCACATTTCGATCACCCAACTCTCTTTTAATTGAAGTGGGAAAGAAGACTACAGTCAGCAATATTCTTAGGGAGATAATTTTACAGATATCAAAAAGCATTGGAAATATTGCATTCTATGATGCTGAAGGCTTAGCATGTAATGTGATTCCTTCCATCATTCGTCCAAGGATGTCTCTGATGCTTACAGTTGAAGGCATGTGGCCATTTCTTGTTTCCGTAATTCTACCAAATGGTAGCTTCCATGATCTATCTATTATCAGTGAGCTTCTGAAGCTTCGAAGTCTTAGGTTGGAATGCAGTTCACAAATTCAAATAAATGGAGATACGGCCATGGATTTTTTCACTACCATTAACTCTAAGGGACTGGGAGTAGTTCCAACTATATCTCAAGCATCAAACATGAATGCCTCTGAATTTCTTAATTGTGGCAGTCAAGATGACATTTCTGGATCAAAAAATTCCTCAAATTTCTATTTGATTCAAATAGGAATGAATTGTGCAATATCAATGATTCTAAGAAAGAGCATTTTCCAGAAATCAGGAACTTGTTCTGGAGATCATTTATTACTTCCTGGTGACAAGAATCTTGAATGGTTAACCTTCAATGGCGAAGGTTCTTCTGTAACTTATGAAGTCTCTCAAATGAAAGGTCGTTACTTGAAGTCTGTGATGTTGAGCATTTTCTATTCTTCTTCAGCAGAGATAACGACACCAGAAATTCTCAAAAGTGTTTCGATCATTACACCAACAACCAACCATGTCTATGAAGGAGATAGACTGACTTCACTAGAACAGAAGGATTGGAAGAAAGTAATATCAAAAATTCAAGCTGGTAATAAAGTACAGGTGATTGTTGAGGTTGGACATGGGTTCGTAGTGAGGAAGACAACAGTTTATCTCATATATGATGAACCAATTAACCATTACAAGAAGCAGTATCAAGTAAAAGATATCTTTTCTGGTTGTGATGATTTGGTAGCTATAATGAATGAAAATGTTTTTGGTGTTGATAATAAGGCAGCAGATAAGAATGTTTCTCATTTAGATTGCGACAAACAAGTGACTCAGTCCAGGCCAGCTTTTACAGAAGTTGACATAAGTCCCACTAACAAGACACAGAAGTGGTTTGAAGAGGATGATACAAGTTCCAAAAAGAAGAGAAAAATCTCTTCATCTAGTCTCTGTTTTGTGAAGCCTGCACCAGAAATTAAAAAGTTTAATTCAATCAAGACTTTCAAGCCAAAGTCTAAGGGATACATTCCTCCTGCTCAGACTTCTCCCATTGTGGTTCCAAGTGCTTCCTTCTTAAACTTTCAAGAGGAGTCTGTCAACTCGGGTTTCAAAAGCACAACTCGAAATCAAGATCAACAGCTTCAAAAGAGTCCTTTTGTTCTTATGACTGAAGATGCCGAGGCACATGGAGTCAAAGAAACAAATGAAAGTGTGCATCTTGTCAATCTGCCCGAAGATGTTGATGTACTTGCAGAGTTAGATAATATCTTATTAGAGAGTTATAGTTTGTTCCCTACAAAGTCTGCCTCTGCTGTTTCTGGATTCAAATCTCAAAGTCTCTCGGTGATTGATATCCTTCACAACATACATCAACTTTTTGATAATCAAGTAGAAGTATTGGTGGCTAATGTCGGCATTAGAAAACAGTTTCTTGACCTCTTAGCTCAGCTAGACCAAATGAAATCACAAATCCCTACAAATCTTAAGCCTTTGGTTAATGATATTAAGAAATTCTATGAAGATGCCCTCAATTATTTTCCATCTATTCAAGAAGTCTTTGGCAATTATCAAAGGTTAATTGATTCCAAGAATCAACTTCAGAAGAAGTTAGAAACAGCTAAATCCAGGCAGGCTCACTTTTCTGCTTCAATTTCTAAAGGGAAGGAAAGGATTAATCAGATGTCAAAGGAAGTCAGCGACTTAGAGATGAAACTGAAAGCCCTATGTGAGAACAGGGACAAGTTAGAATCCATTGTGCAACTTTGTGAGGTTGAAACACTCAAACATCAATAG 3849 0.3741 MLDDVDELDQLKALCWSREWFGPGSRIIITTRDESLLRVLNVDHVSRMSEMDDDESVEHFCWHAFKQSSPKENFDELSKDVVAYSGGLPLALEVIGSVLFDKNVKEWESLLEKLKKIPNDKVQKKLRISFDSLNDDTVKEIFLDIAFFFIGMDRNDVVHILDEYDAEIGINVLVDRNLVTIDSNNRLGMHALLRDMGREIVREKSPKKLEKRSRLWLQKEVFEVLQTHTGTKAIEGLTLKLPRSNAICLETKAFNKMKRLRLLQLASVQLDGDFEHMSKDIRWVCWHGFPYKYIPSKFYQASLVAMELEFSSLRFMWKEAQEALGLGNILDIRVYVDINSGIVIMGVVIVLRWRGTKRGKERETGRIECDGGGGGVVMFLGMLKVLNLSHSYHLIQTPDFSYLPNLEKLLLKGCSSLSMISDTIGHLKRILLIDLEDCTSLPNLPRSFYELKSLITLIISGCSLIDKLEEDLAQMKSLKKLIADKTAITQVPFSIVRSKSIGYISLYGYEGFVRDVFPSLIWSWMSPTNNPSSLVQSFAGLETVSLDVLNLRRFWVECGTDLQLSGGVAKILDTLYATYYKELELTPTTSQASQISSSSLIDFHSQFRTFRSPNSLLIEVGKKTTVSNILREIILQISKSIGNIAFYDAEGLACNVIPSIIRPRMSLMLTVEGMWPFLVSVILPNGSFHDLSIISELLKLRSLRLECSSQIQINGDTAMDFFTTINSKGLGVVPTISQASNMNASEFLNCGSQDDISGSKNSSNFYLIQIGMNCAISMILRKSIFQKSGTCSGDHLLLPGDKNLEWLTFNGEGSSVTYEVSQMKGRYLKSVMLSIFYSSSAEITTPEILKSVSIITPTTNHVYEGDRLTSLEQKDWKKVISKIQAGNKVQVIVEVGHGFVVRKTTVYLIYDEPINHYKKQYQVKDIFSGCDDLVAIMNENVFGVDNKAADKNVSHLDCDKQVTQSRPAFTEVDISPTNKTQKWFEEDDTSSKKKRKISSSSLCFVKPAPEIKKFNSIKTFKPKSKGYIPPAQTSPIVVPSASFLNFQEESVNSGFKSTTRNQDQQLQKSPFVLMTEDAEAHGVKETNESVHLVNLPEDVDVLAELDNILLESYSLFPTKSASAVSGFKSQSLSVIDILHNIHQLFDNQVEVLVANVGIRKQFLDLLAQLDQMKSQIPTNLKPLVNDIKKFYEDALNYFPSIQEVFGNYQRLIDSKNQLQKKLETAKSRQAHFSASISKGKERINQMSKEVSDLEMKLKALCENRDKLESIVQLCEVETLKHQ 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120923g00013 1282 Gene3D - 50 134 IPR042197 -
Stsc120923g00013 1282 Gene3D Ribonuclease Inhibitor 177 554 IPR032675 -
Stsc120923g00013 1282 Coils Coil 465 485 - -
Stsc120923g00013 1282 Coils Coil 1236 1270 - -
Stsc120923g00013 1282 PRINTS Disease resistance protein signature 85 99 - -
Stsc120923g00013 1282 PRINTS Disease resistance protein signature 425 441 - -
Stsc120923g00013 1282 Gene3D - 1 45 IPR027417 -
Stsc120923g00013 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 145 IPR027417 -
Stsc120923g00013 1282 SUPERFAMILY "Winged helix" DNA-binding domain 120 226 IPR036390 -
Stsc120923g00013 1282 SUPERFAMILY L domain-like 238 707 - -
Stsc120923g00013 1282 Coils Coil 1208 1228 - -
Stsc120923g00013 1282 Pfam NB-ARC domain 1 126 IPR002182 GO:0043531
Stsc120923g00013 1282 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 575 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120923g00013 Stsc-Chr120923 62369 72848 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120923g00013 1 492 WRKY Transcription Factor Family AT5G45050 28.905 6.48e-45 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120923g00013 - - ahf:112749677 858.211