Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120922g00008 ATGAGTATGGATAAAATTGTGTTAGGAACAGCAATCAGTAATCATAATAATAAGGGCAGCATAATAGGAGTTGTTGCAGACAATAGTGCTAGAAGTGGAAAAGAGGAGATAGTGGCTATTAAGATTGCATTGGAGGATTTCTATGATTACACCAATAGAAGGTTTGCCTTTGTTCTTCACATAAGAGACTCTCATGGGGATCCCCTTAAAGCTGCTCTTTCAGCAAGGGACCTTATTGAGAAGGAGCATGTGGAAGCAATTATAGGACCACAAACATGGGAAGAAACAACATTAATAGCTGAACTTTGCAACCAAAACATGACACCTCTTCTATCTCTAGCAGATGTAACTCCAAATTGGGCAACATCAAAATGCCCCTTCATGGTTCAAACTTCACCTAATCCATTAAATCAAATGAAAGCAGTATCTGCTATTGTTCAATCATGGGATTGGTACTGTGTCAACATAATCTATCAAGACAGAGATGCTTCATCCACACAATCTTTATCCACTCTCTATACAGCACTCACTGAAGCAGGTATCACAATAAGTAACCTCTTGAGTGTTCCTCCTTTTCCTTCCTCTTCACTGTCCAAAGATCTTGAGAATCTTAGAGAAGGCCACTGTAGAGTCTTTGTTGTAAACTTGTCCCTTAACTTGGCCATAAACCTCTTCGAAACCGCGTCGAAAATGGATATGGTAGGGAAAGACTATGTTTGGATCATTACTGACCCTTTTACAAGCCTTGTCCATTCCTTAGATGCTTCAACTGTCTCTTCAATGCAAGGGATCATTGGTGTCAAGAGCTATTTCCAAGAAATAGGGCAAAAACATGAAGAATTCTACCGGAAATTTCGTCGGGAATTTAGCTTAGATTACCCTCAAGAACTCAACAATGAGCCTGGGAATTTTGCAGCACATGCTTATGATGCTGCATGGACTGTGGCTCTAGCCATGAGTCAAACCAACAAAAATGAAGGTGGCCAATTCCTGATGAACAAGATTCTGCATAGTAATTTCCTCGGCCTGAAAGGAAGAATTCAATTCAATAATCATAGGTTAGATCCTACAAATACTTTTCAAATCATCAATGTGATTGGGAAGGGGTACAAGGAGATTGGATTTTGGTCAAATGGACTTGGATTTTCAAGCAATATTGGTGAAGAACATGAAGTTAGTTATAGTTGTTCAATGAAGGAACTAGGACAGGGATTCACCATTGATCTCTTCAAAGCAACTATGGAATTGATGCCCTACCATGTTCCATACAAGTTCTATGCTTTTAATGATACATATGATGAGTTGGTCAGGCAAATTTATTTGAAGAATTTTGATGCAGTAATTGATGTAACAATAGTATCATACCGGTACCAGTATGCCGAGTTCACTCAGCCATACACTGATCCAGGAGTGGTGATGATAGTCCCTTTGAAATCAAAAACAGGACACAGAGCTTGGCTATTTGTGAAGCCTTTTACAAAGACAATGTGGATCCTAATAATGGTAGTCATTATCTACAATGCCTTTGTTTTGTGGATGTTAGAAAGAAACCATTTCTGTGAACTCAAGGGCTCCATACTCAAACAATATGGCACCATAGCTTGGTTGGCATTGACTCCTCTGATAAACTTAAATGGTAACATTCTTAACCTTCTATAA 1659 0.3888 MSMDKIVLGTAISNHNNKGSIIGVVADNSARSGKEEIVAIKIALEDFYDYTNRRFAFVLHIRDSHGDPLKAALSARDLIEKEHVEAIIGPQTWEETTLIAELCNQNMTPLLSLADVTPNWATSKCPFMVQTSPNPLNQMKAVSAIVQSWDWYCVNIIYQDRDASSTQSLSTLYTALTEAGITISNLLSVPPFPSSSLSKDLENLREGHCRVFVVNLSLNLAINLFETASKMDMVGKDYVWIITDPFTSLVHSLDASTVSSMQGIIGVKSYFQEIGQKHEEFYRKFRREFSLDYPQELNNEPGNFAAHAYDAAWTVALAMSQTNKNEGGQFLMNKILHSNFLGLKGRIQFNNHRLDPTNTFQIINVIGKGYKEIGFWSNGLGFSSNIGEEHEVSYSCSMKELGQGFTIDLFKATMELMPYHVPYKFYAFNDTYDELVRQIYLKNFDAVIDVTIVSYRYQYAEFTQPYTDPGVVMIVPLKSKTGHRAWLFVKPFTKTMWILIMVVIIYNAFVLWMLERNHFCELKGSILKQYGTIAWLALTPLINLNGNILNLL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120922g00008 552 CDD PBP1_GABAb_receptor_plant 22 386 IPR044440 -
Stsc120922g00008 552 FunFam Glutamate receptor 138 299 - -
Stsc120922g00008 552 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 539 IPR015683 -
Stsc120922g00008 552 Pfam Receptor family ligand binding region 39 366 IPR001828 -
Stsc120922g00008 552 Gene3D - 484 543 - -
Stsc120922g00008 552 Gene3D - 29 355 - -
Stsc120922g00008 552 SUPERFAMILY Periplasmic binding protein-like II 403 503 - -
Stsc120922g00008 552 SUPERFAMILY Periplasmic binding protein-like I 22 377 IPR028082 -
Stsc120922g00008 552 Gene3D - 388 483 - -
Stsc120922g00008 552 Gene3D - 134 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120922g00008 Stsc-Chr120922 53940 56978 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120922g00008 22 541 Ion Channels AT2G29120 29.070 1.36e-71 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120922g00008 - - aprc:113855498 712.22