Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120922g00007 ATGAAAATAGACATAGGAGACAAGCTACACAACAATTTATCAAGGGTGGCTATGGTGGTGTGGTTATTTGTGGCCCTCATCATAATGCAGACATACACAGCCAACTTAACCAGCATGCTAACAGTTGAAAGGCTTGAACCAACAATAAGTGATGTTGATCAGTTAAGAAACAACAATATCATGGTTGGATACAGTACTGGATCTTTCTTGAAAAATTATCTGCATGATGTGCTGCATTTTAACCCTGCAAACATAAGGCAATTTAGATCACATGAAGAGTTTGCTGAAGCTCTCAGAAGAAAAGAAATTGGAGCTATCTTCATTGAAGCACCTGGGGCCAAGATTTTCCTTGCAAAGTACTGTAAAGAGTTCATTCAAGCCGGCTCGATGTATAAAATCGGAGGATTCGGTTTCGCTTTCCCAAATGGATCTCCATACCTTCCACTTGTGAACAGGGCACTGTTGGATTTATTTGAATCCGGAAAACAGAGAGAACTGGAGAACAGAATGCTTGCATCAGAGAAATGTGAAGAGTCACAACCGGACGGCGAAACTGCGAGCCTTAGCCCAAACAGCTTCTGGGCCTTGTTCACTTTGACGGCAGGTACATCCACAATTGCCCTCTTGATTTATGTCACCGGCACCAATTACTCGAACCACGATCATCGGAGGCGAATCCAGAGAATAACCACCGTGGTGACTGAACGGTGGGGACAAGCCAAGAAACGACTTTCCAAGAAAGATAGTCAGGTCGTTGTTGAATGTCCTGTGGACTCTCCAGATTCAAGTTCACATGGTGCCATGCAGCCTCCTCATGCTTCATCAACTATATTTATTACTTCAAATGAATGTGAACAAAATTATGGAGTTGACAAGGTCAATCATGGTTAA 891 0.4276 MKIDIGDKLHNNLSRVAMVVWLFVALIIMQTYTANLTSMLTVERLEPTISDVDQLRNNNIMVGYSTGSFLKNYLHDVLHFNPANIRQFRSHEEFAEALRRKEIGAIFIEAPGAKIFLAKYCKEFIQAGSMYKIGGFGFAFPNGSPYLPLVNRALLDLFESGKQRELENRMLASEKCEESQPDGETASLSPNSFWALFTLTAGTSTIALLIYVTGTNYSNHDHRRRIQRITTVVTERWGQAKKRLSKKDSQVVVECPVDSPDSSSHGAMQPPHASSTIFITSNECEQNYGVDKVNHG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120922g00007 296 SMART GluR_14 2 173 IPR001320 GO:0015276|GO:0016020
Stsc120922g00007 296 Pfam Bacterial extracellular solute-binding proteins, family 3 30 169 IPR001638 -
Stsc120922g00007 296 Gene3D - 5 79 - -
Stsc120922g00007 296 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 236 IPR015683 -
Stsc120922g00007 296 Pfam Ligand-gated ion channel 9 202 IPR001320 GO:0015276|GO:0016020
Stsc120922g00007 296 SUPERFAMILY Periplasmic binding protein-like II 30 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120922g00007 Stsc-Chr120922 51903 53276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120922g00007 13 222 Ion Channels AT5G11210 38.140 1.14e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120922g00007 - - gmx:100799573 355.91