Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120922g00006 ATGTCAAGTTTGTTATCAAATTCAAATTCAAATTCAAACTCACCTGCAATCATCAATTCTTCTTCAAGTCAACAGCACCAATTGTCAACATCTTGGATGGATGAGTTCCTAGACTTCTCGTCGTCGCGGCGGGGCGCGCACCGGCGCTCCGCAAGCGACTCCGTGACGTTCTTGGAGTCTCCGATGTTCTTTGACAGGCTGGACGATGACCAGCTCATGTCGATGTTCTCCGACGACGTTGCCGCCGTGGCGATGCCGCATCCGCCGCCGCTGTCGTCAGCGTCCGATCCGTCGTCGCCGTCGTCGGACCAGACGAGTAACAACGATGAGAAGCCAGCGGCAATGGCGATGGATATTGCACCGCCGTTTATGCAGGAAAATAATAACGATAATCACGTGATGAAGCTTAAGAATGAAGCGGTTGAGGAGGAAAGCTTTGGCAAGAATGAGGAGGCGGCGGCGCCGTCCTCCGCCGCCACCGGCATCATTGAGACCATCGTTGATCCCAAGAGAGTCAAAAGAATTTTGGCTAACCGGCAATCAGCTCAGAGGTCAAGGGTGAGAAAGCTACAATACATTTCTGAACTTGAAAGGAGTGTAACAACTTTGCAGACGGAGGTATCAGCATTGTCACCAAGGGTAGCGTTTTTGGACCACCAACGTTTGATTCTGAATGTGGACAACAGTGCATTGAAGCAACGCATTGCTGCTTTGGCTCAAGACAAGATTTTCAAAGATGCTCATCAAGAAGCACTGAAGAAGGAAATAGAAAGACTTAGACAAGTCTATCACCAGCAACAGAACAACAACAACAATAATAATGGCCATTCATCTCTTCATGCTCCAACGACCATGGCATGTAATAATAATAATAATGACAATAATAAGGAGCAGCTCCTGAGTTGA 906 0.4812 MSSLLSNSNSNSNSPAIINSSSSQQHQLSTSWMDEFLDFSSSRRGAHRRSASDSVTFLESPMFFDRLDDDQLMSMFSDDVAAVAMPHPPPLSSASDPSSPSSDQTSNNDEKPAAMAMDIAPPFMQENNNDNHVMKLKNEAVEEESFGKNEEAAAPSSAATGIIETIVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQQNNNNNNNGHSSLHAPTTMACNNNNNDNNKEQLLS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120922g00006 301 MobiDBLite consensus disorder prediction 267 301 - -
Stsc120922g00006 301 FunFam Basic leucine zipper 61 169 242 - -
Stsc120922g00006 301 CDD bZIP_plant_RF2 171 221 IPR044759 GO:0003700|GO:0006355
Stsc120922g00006 301 Coils Coil 124 144 - -
Stsc120922g00006 301 PANTHER BASIC LEUCINE ZIPPER 34 19 290 - -
Stsc120922g00006 301 Pfam bZIP transcription factor 170 214 IPR004827 GO:0003700|GO:0006355
Stsc120922g00006 301 MobiDBLite consensus disorder prediction 83 110 - -
Stsc120922g00006 301 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 173 188 IPR004827 GO:0003700|GO:0006355
Stsc120922g00006 301 Gene3D - 169 242 - -
Stsc120922g00006 301 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 168 220 IPR004827 GO:0003700|GO:0006355
Stsc120922g00006 301 Coils Coil 249 269 - -
Stsc120922g00006 301 SMART brlzneu 166 230 IPR004827 GO:0003700|GO:0006355
Stsc120922g00006 301 MobiDBLite consensus disorder prediction 1 25 - -
Stsc120922g00006 301 SUPERFAMILY Leucine zipper domain 170 224 IPR046347 GO:0003700|GO:0006355
Stsc120922g00006 301 MobiDBLite consensus disorder prediction 96 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120922g00006 Stsc-Chr120922 45120 48341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120922g00006 27 247 bZIP Transcription Factor Family AT3G58120 53.600 6.67e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc120922g00006 bZIP_1 8.1e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120922g00006 - - gmx:100820197 311.227