Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120922g00001 ATGGATAAGATGATAGCTTCAGAGATGGATCAACATAGACAAGGTTATTTTCATTCAGAACCCAGTATCCTTCCAAGAGGCACGGGCATCTCGCATCCTAATATCCGTACAATTGTGGCAGCTTCCGGGAGCACAAGTAATCACGATCCCCACTATTTACCACCCGATGCTTATGACAATGGCGTATATGTGACACAGTATAACGGCGTTGAACCACAACATAATCGTAACATGGGCGTTGCAGCTACGCCGAATTTATATTATTCCGGCATGAACCCTTCTTCTAGTACTGGTGTATTCCCCATGCCTCTAAATCATAGAGGCTCTGATCAGTTGCCTGGTTCAGGCGCTTATGCAGTGTCCTTAGTTTCTTCGGATCATTTTGGAAGAAGCAGTAGCTTCGTGGATGATGTCAGAGGTCCATACAAGAGGAAAAGTGCTGAAGGGATGAGAGGAAATTACCAGTATTTTAACGCTCCGGCTAGTTCCTCAACTGCTCCCCCTAATGCCGGGCATGCTGACGGAGTTCCGGTGATGGATGCTGCGTCATTTCCTCTGCGTGTCCCTTCATTTGTGGAAGTAGGACCACATGGTAATGCATGGAGCAGATCAGGTGATTCCATTATGGTGCATGATCATAACCATTTGATTCGAGGAAACTATGTAGGGCAGCACTTTCAGCCGGCGGCACCTCCGTGGTTGGACCAGCAATTGAATAGTAATAACAGCGACGGCCATACAACACCATGGAATCAGTCTCTTCCAATGCCTTATATGCATGCTCCAAATGTTAATGGAGGTTCAATAGAGAGTGCAAGTATGGGTTTGCCAAGGTATCACGAAACTGCAAGCAATAGAAACGGTCTCAGGTTTCCTCACCCCCCTCCAGTCAATCACCAGCACCATAATTATCATCATCCGGCACTGCCTATGCAAGGAGTAAGAGGTCATGGTGTTAACTTCCATCCCCCTGTAACCGCAGCTTCATTCAGAGTTCCAGCAAATCCATCACGCGGTGCTGCCATCCCCACGCCTAATGGTTTCGAGATGGCCCCTAGGCATGTCGGTCCTGATGTTGCTTTAATCGATGAGGTGGGAAATTTAGTTGACCATCATCGAGACATGCGCTTGGACATAGAGGATATGTCTTATGAGGATCTTCTTGCATTGGGTGAGCGGATCGGCAATGTAAGCACTGGTTTATCAGAGGAAACAATCGGGATTCAATTGAAGACAAAAACATATTCAAAATCAGTTTCTGCTACTATTTCAGATGAGGCAACCCCGGAAGACCGGGAAGCTGATTCTTGCATTATATGCCAGGATGAATACAAGAACAAAGAGAAGATCGGAATTCTGCGATGCGAGCACGAGTACCATGCGGAATGCTTGAGGAAGTGGTTGATTGTGAAGAATGTCTGCCCAATATGCAAATCAGAAGCATTGACTCCCGGAGGGAAGGATGTATAG 1470 0.4667 MDKMIASEMDQHRQGYFHSEPSILPRGTGISHPNIRTIVAASGSTSNHDPHYLPPDAYDNGVYVTQYNGVEPQHNRNMGVAATPNLYYSGMNPSSSTGVFPMPLNHRGSDQLPGSGAYAVSLVSSDHFGRSSSFVDDVRGPYKRKSAEGMRGNYQYFNAPASSSTAPPNAGHADGVPVMDAASFPLRVPSFVEVGPHGNAWSRSGDSIMVHDHNHLIRGNYVGQHFQPAAPPWLDQQLNSNNSDGHTTPWNQSLPMPYMHAPNVNGGSIESASMGLPRYHETASNRNGLRFPHPPPVNHQHHNYHHPALPMQGVRGHGVNFHPPVTAASFRVPANPSRGAAIPTPNGFEMAPRHVGPDVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGNVSTGLSEETIGIQLKTKTYSKSVSATISDEATPEDREADSCIICQDEYKNKEKIGILRCEHEYHAECLRKWLIVKNVCPICKSEALTPGGKDV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120922g00001 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 482 IPR013083 -
Stsc120922g00001 489 Pfam Ring finger domain 435 478 IPR001841 -
Stsc120922g00001 489 ProSiteProfiles Zinc finger RING-type profile. 437 478 IPR001841 -
Stsc120922g00001 489 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 114 482 IPR045191 GO:0061630
Stsc120922g00001 489 SMART ring_2 437 477 IPR001841 -
Stsc120922g00001 489 SUPERFAMILY RING/U-box 428 483 - -
Stsc120922g00001 489 CDD RING-H2_RNF24-like 435 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120922g00001 Stsc-Chr120922 18249 21119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120922g00001 358 482 C3H Transcription Factor Family AT2G15530 44.800 4.84e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120922g00001 K19041 - gmx:100800642 607.06