Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120921g00005 ATGCTATACATTGGTCATCAAGTCATGATTACAGATCATCTCCTTGCATCTGCTGGGATGGATCATATGGTTTGCGTGTGGAATGTATGGAGCAGAGATCAGAAGAAAGCGCGCATGCTGAACTTCCACAATGCAGCAGTGAAAGATGTGAAATGGTCTCCACAAGGGCTCTTTCTACTTTCATGTGGGTATGATTGTACATCGAGATTGGTTGATGTTGAAAAGGGATCAGAGACTCAGGTTTTTATGGAAGATCAAGTTGTTGGATCCATAAAGTTCCATCCGGACAATTCGAATCTTTTCCTTTCTGGTGGATCACAGGGCCATATCAAACTATGGGATATCAGAACTGGAAAAGCAGTGCAAAACTATACTCGGAATTTAGGTCCGATTTTGGATGTTGAGTTTATGGTGAATGGGAAGCAATTCATTTCTTCTAGTGATGTATCTAGGAGCAATGTGAGCGAGAACTCCATCATTGTTTGGGATATTTCAAGGGAGGTTCCATTGTCTAATCAGGTTTATGTGGAAGCTTATACTTGTCCCTCAGTAAGGTGCCATCCATTTGATTCAACTTTTGTTGCTCAATCAAATGGGAATTACATTGCAATTTTTACTACGAGCCCTCCTTACCGACTCAACAAATATAAGCGGTATGAGAGCCATGGTGTCTCTGGGTTCCCAATTCGTTGCGATTTCAGCTTGGATGGGAAGAAGCTTGCATCTGGGTCTTCAGATGGTTCTATTTACCTTTACGATTATCAGTCATCAAAAGTTGTAAAGAAAATCAAGGCCTATGACCAAGCATGCATCGACGTCACCTTTCACCCAGCTCTACCTAATATTATTGCTTCGTGCTCATGGGATGGAAGCATTTCAGTATTCGAGTAG 891 0.4175 MLYIGHQVMITDHLLASAGMDHMVCVWNVWSRDQKKARMLNFHNAAVKDVKWSPQGLFLLSCGYDCTSRLVDVEKGSETQVFMEDQVVGSIKFHPDNSNLFLSGGSQGHIKLWDIRTGKAVQNYTRNLGPILDVEFMVNGKQFISSSDVSRSNVSENSIIVWDISREVPLSNQVYVEAYTCPSVRCHPFDSTFVAQSNGNYIAIFTTSPPYRLNKYKRYESHGVSGFPIRCDFSLDGKKLASGSSDGSIYLYDYQSSKVVKKIKAYDQACIDVTFHPALPNIIASCSWDGSISVFE 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120921g00005 296 ProSiteProfiles Trp-Asp (WD) repeats profile. 233 262 IPR001680 GO:0005515
Stsc120921g00005 296 Pfam WD domain, G-beta repeat 219 253 IPR001680 GO:0005515
Stsc120921g00005 296 Pfam WD domain, G-beta repeat 88 114 IPR001680 GO:0005515
Stsc120921g00005 296 Pfam WD domain, G-beta repeat 38 70 IPR001680 GO:0005515
Stsc120921g00005 296 ProSiteProfiles Trp-Asp (WD) repeats profile. 81 123 IPR001680 GO:0005515
Stsc120921g00005 296 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 81 119 - -
Stsc120921g00005 296 ProSiteProfiles Trp-Asp (WD) repeats profile. 40 81 IPR001680 GO:0005515
Stsc120921g00005 296 Gene3D - 5 296 IPR015943 GO:0005515
Stsc120921g00005 296 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 12 296 - -
Stsc120921g00005 296 SUPERFAMILY WD40 repeat-like 11 295 IPR036322 GO:0005515
Stsc120921g00005 296 SMART WD40_4 214 253 IPR001680 GO:0005515
Stsc120921g00005 296 SMART WD40_4 117 163 IPR001680 GO:0005515
Stsc120921g00005 296 SMART WD40_4 33 72 IPR001680 GO:0005515
Stsc120921g00005 296 SMART WD40_4 256 296 IPR001680 GO:0005515
Stsc120921g00005 296 SMART WD40_4 75 114 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120921g00005 Stsc-Chr120921 50317 53695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120921g00005 14 166 U-box Gene Family AT2G33340 26.115 3.41e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120921g00005 K24742 - lja:Lj0g3v0069539.2 532.332