Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120920g00017 ATGGAGTGGAATGCAAAATCTCCCTCACAGTGGGAGTGGGAGCACCTGTTCTTCTCCAATGCAAAAGTATCAGAAAACCCCAAATTACAACCACCAACAGATTGGAGCGACGAAGCAAATGGAGAAATCAATGTTGGGTTGTTGGACAATTCTGGTGGTAGCGGTTGCTCCGAGTCTGAGCTCATGCACACATCCTCCTCAAGAAGCTCAAAATCTGCTTCCATCAATTCATCTTCCAATAGGGATAGTAAAACATCTATGTTGACCTTTGAAAGTTCCCAAGATGATTCCAGTGGTAAAAAAGAATTGTCTAAAGAAGAGCCAGTTAAAAATTCTCATTCTCTTGAGCCTCCTTCTGGCTCTGGTGAACCATTGCTTACTCTAAAGCTTGGTAAACGCTTGTACTTTGAGGATGCTTGTCCAGGAAGTGGTGCCAAGAAGAACCAATCTTCCTCAGGAGCTTCAATTCCAGCTGTGAGTAGTGGAAAGAAATCCAAGTCCAATGGTCAGAACATGCAAAACCAGTGCTGCCAGGTTGAAGGTTGTGGCCTCGACCTCTCTTCCGCTAAAGATTACCATCGCAAGCATAGAGTTTGTGAAAGTCATTCCAAATCTCCTAAGGTAGTTATTGCTGGTTTGGAACGTCGCTTTTGCCAGCAATGTAGCAGGTTCCATGGTCTGTTAGAGTTTGACGAAAACAAAAGAAGCTGCAGAAGGCGTCTTTCAGATCACAATGCACGGCGCCGGAAACCTCATCCTGAGACTGTCCAATTAAATCCGTCAGCTTTGACTTCCTCACCTTTTGAAGTTGGTAGACAACAGATTAGCCCCTTCACTTACACAATGAATGGAGCTATGAACACAGCCTGGCCAGACATACGGCGGAGCAAGCAGCTCCCCCAGACGAAAGATTTTCTGCTGAAGGCTGTGAAAGGCAACACTGAGATACCAAGTTTTATGAGCATGGTCGCAGAGGACTACAAAGGCAAACAAAACAAGACTCTCTTACTCGAACAATTCATTCAAACTGCTGCTTACCTGCCTCTTTATTTTATTTTCAGGTGTAGAGGATTCCACTAA 1080 0.4463 MEWNAKSPSQWEWEHLFFSNAKVSENPKLQPPTDWSDEANGEINVGLLDNSGGSGCSESELMHTSSSRSSKSASINSSSNRDSKTSMLTFESSQDDSSGKKELSKEEPVKNSHSLEPPSGSGEPLLTLKLGKRLYFEDACPGSGAKKNQSSSGASIPAVSSGKKSKSNGQNMQNQCCQVEGCGLDLSSAKDYHRKHRVCESHSKSPKVVIAGLERRFCQQCSRFHGLLEFDENKRSCRRRLSDHNARRRKPHPETVQLNPSALTSSPFEVGRQQISPFTYTMNGAMNTAWPDIRRSKQLPQTKDFLLKAVKGNTEIPSFMSMVAEDYKGKQNKTLLLEQFIQTAAYLPLYFIFRCRGFH 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120920g00017 359 MobiDBLite consensus disorder prediction 23 124 - -
Stsc120920g00017 359 MobiDBLite consensus disorder prediction 242 263 - -
Stsc120920g00017 359 Pfam SBP domain 177 250 IPR004333 GO:0003677
Stsc120920g00017 359 MobiDBLite consensus disorder prediction 50 94 - -
Stsc120920g00017 359 SUPERFAMILY SBT domain 176 256 IPR036893 GO:0003677|GO:0005634
Stsc120920g00017 359 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 62 264 IPR044817 GO:0003677
Stsc120920g00017 359 FunFam Squamosa promoter-binding-like protein 14 168 238 - -
Stsc120920g00017 359 MobiDBLite consensus disorder prediction 95 112 - -
Stsc120920g00017 359 MobiDBLite consensus disorder prediction 144 170 - -
Stsc120920g00017 359 MobiDBLite consensus disorder prediction 142 170 - -
Stsc120920g00017 359 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677
Stsc120920g00017 359 Gene3D - 167 238 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120920g00017 Stsc-Chr120920 93817 97306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120920g00017 1 251 SBP-box Gene Family AT1G27370 50.394 1.17e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc120920g00017 SBP 2.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120920g00017 - - ahf:112792599 550.436