Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120920g00011 ATGAAAGTGAAGAGTGGTTGTGTGAGAAGGGTTTTTTATTCATGGATTGTGTTTTGTACGGTGGGAGGTTTGTACGGGTTCTGGCATATGAGCTTAAATGCTTGTGAGCAGAGGAAAGAGAGTCTAATAAGCATGTGTGATGAAAGAGCAAGGATGCTGCAGGATCAGTTCAATGTGAGCATGAACCATATACAAGCCATGTCCATCTTGATCAAAACCTTCCACCATAACATGAACCCCTCCAGCATCGACCAGAGCACTTTTGCCAGATACACTGAAAGAACTGCCTTTGAGAGGCCCCTCACAAGTGGTGTTGCATACGCTGTAAGGGTTCTCCATTCCGAAAGGGGGCAGTTTGAGAGGCAACAAGGGTGGACTATTAAGAATATGAATACTCTGCATCCATCCCCTGCTCAACAAGAATATGCTCCTGTCATCTTTGCTCAAGATACAATTTCACATGTCATTTCTCTTGATGTTCTATCTGGAAAGGAAGACCGTGAGAATGTGCTCCGTGCAAGGGAGTCAGCCAAAGGAGTTTTAACTGCACCCTTCAGGCTTCTCAAGACCAATCGCCTCGGGGTAATCCTCACATTTGCTGTATACAAGAGAATTCTTCCATCAAATGCAACCCCGTATCAAAGGATTCAAGCAACTGATGGATATCTTGGCGGAGTCTTTGATGTTGAGTCATTAGTGGAGAAGCTACTGCAACAACTTGCTAGCGAGCAAGCTGTAATTGTAAATGTGTATGATACTACCAATAATACACATCCTATTGTCATGTATGGTTCAAATGTATCAGGGGACTCTTTCAGTTATGTCAGCACACTTAACTTTGGAGATCCTCTCAGGAAGCATGAGATGCATTGCAGGTTCAAACAAAAACAGCCATGGCCATGGTTGGCATTCAATACTTGTGTAGGGGGGTTTGTTATTTGTGTTCTTCTTGGGTATATTTTCTATGCCACTTGGAATCGAGTTGTGAAAGCAGAAGAGGATCGCGATGAGATGACTGAGCTTAAAAAGCGAGCTGAGGCCGCTGATATTGCAAAATCACAGTTTCTTGCTACTGTGTCCCACGAGATTAGAACACCAATGAATGGGGTTTTAGGGATGCTGCATATGCTTATGGACACGGATCTAGACGTAACCCAGCAGGAGTATGTGAGAACGGCGCAGGGAAGTGGAAAAGCTTTGGTGTCACTTATAAACGAGGTATTGGATCAGGCAAAGATTGAAGCTGGTAAGCTGGAGCTTGAAGCTTCCCTCTTTGACTTGCGTGCTCTCTTGGATGATGTCTCATCACTGTTTTCAGAAAAGTCTCAAGCAAAAGGAATAGAGTTGGCAGTTTATGTATCAGATGAGGTTCCTGAGGTGTTAATAGGTGATCCAGGAAGGTTTCGACAAATTATTACCAATCTCATGGGTAATTCAATTAAGTTCACAGAGAAAGGGCATATTTATGTGACAATCCATGTTGTTGAGGAGGTGGTCCATTCAATAGAAATTGACAAAGAATTAGGCTTGGAAGATAGTAATAATGTGAGTGTGAGTGGTTTCCCTGTTGCTGATAGTCGCCGAAGCTGGGAAGGCTTCAAAGCATTCAGTCAAGTAGGGCCTCTTGGTTCTTTCTCATCCGATGCTGATCTAATCAACTTGATTGTATCCGTTGAGGACACTGGAGAAGGGATCCCTCTGGAAGCACAGTCTCGAATCTTCACCCCATTCATGCAGGTTGGTCCTTCAGTTTCTCGCAGACATGGGGGAACAGGTATTGGACTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGCGAAATTGGATTTGTCAGCTTGCCTAAGATTGGATCCACCTTCACTTTTACTGCTCTCTTCACCAATGCCTGCAACAACCACCACCAATCTAATCCTCCATCTTCAGAATTTCAGGGAATGACAGCTTTACTCATTGATCCAAGACCAGCTAGAGCCAAAGTGTGTAGATATCATATGCAGAGGCTCGGCATTCGTATCCAAGTGGTTTCAGATTTAAGCCAAGGTTTGTCCACCATAACCGAAGGCAATCAGATTATCAATATAGTACTTATTGAGCAGCAAGTGTGGGATAGAGATTCATGCATGTCATCTGGCTTTGTGGACAGCACCAGTAGAGTTCATGATGGAGTTGCTCCAAAGTTGTTCATTCTTGTTAATTCCAATGCTTGTTTGGGAGAAACAAGTGGGACATCAAACCCTAGGGTGATCATAAAACCTCTGAGAGCAAGTATGCTTGCTGCGTCACTGCAACGAGCCATGGGTGTTAGTTGCCGAAATGGGGAGGTCCCAGCGAGTTTATCTCTTGGTCACCTTCTTGGAGGGAAGAAAATACTAATTGTAGATGACAATGGTGTGAACCGCACCGTAGCAGCTGGTGCTTTGAAGAAGTATGGAGCAGATGTGGTGTGTGTTAGCAGCGGAAAAGAAGCCATCTCTAAACTAAAACCACCCCATGACTTTGATGCATGCTTCATGGATATTCAAATGCCAGAAATGGACGGTTTTGAAGCTACAAAGAAAATCCGGGAGATGGAACGTTGTGGCAGGTCTAAGAGAGATGGTTTTGTAGATAACTTATCAAAGTGGGATGTTCCTATTTTGGCTATGACTGCAGATGTGATCCAGGCTACCCACGAGGAGTGTGTAAGGCGTGGCATGGATGGATATGTTTCTAAACCCTTTGAAGCCGAACAGCTTTATCGAGAAGTCTCAAGGTTTTTCCACTCATGA 2772 0.4408 MKVKSGCVRRVFYSWIVFCTVGGLYGFWHMSLNACEQRKESLISMCDERARMLQDQFNVSMNHIQAMSILIKTFHHNMNPSSIDQSTFARYTERTAFERPLTSGVAYAVRVLHSERGQFERQQGWTIKNMNTLHPSPAQQEYAPVIFAQDTISHVISLDVLSGKEDRENVLRARESAKGVLTAPFRLLKTNRLGVILTFAVYKRILPSNATPYQRIQATDGYLGGVFDVESLVEKLLQQLASEQAVIVNVYDTTNNTHPIVMYGSNVSGDSFSYVSTLNFGDPLRKHEMHCRFKQKQPWPWLAFNTCVGGFVICVLLGYIFYATWNRVVKAEEDRDEMTELKKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQGSGKALVSLINEVLDQAKIEAGKLELEASLFDLRALLDDVSSLFSEKSQAKGIELAVYVSDEVPEVLIGDPGRFRQIITNLMGNSIKFTEKGHIYVTIHVVEEVVHSIEIDKELGLEDSNNVSVSGFPVADSRRSWEGFKAFSQVGPLGSFSSDADLINLIVSVEDTGEGIPLEAQSRIFTPFMQVGPSVSRRHGGTGIGLSISKCLVGLMNGEIGFVSLPKIGSTFTFTALFTNACNNHHQSNPPSSEFQGMTALLIDPRPARAKVCRYHMQRLGIRIQVVSDLSQGLSTITEGNQIINIVLIEQQVWDRDSCMSSGFVDSTSRVHDGVAPKLFILVNSNACLGETSGTSNPRVIIKPLRASMLAASLQRAMGVSCRNGEVPASLSLGHLLGGKKILIVDDNGVNRTVAAGALKKYGADVVCVSSGKEAISKLKPPHDFDACFMDIQMPEMDGFEATKKIREMERCGRSKRDGFVDNLSKWDVPILAMTADVIQATHEECVRRGMDGYVSKPFEAEQLYREVSRFFHS 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120920g00011 923 Gene3D - 30 82 - -
Stsc120920g00011 923 ProSiteProfiles CHASE domain profile. 79 290 IPR006189 -
Stsc120920g00011 923 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 338 417 IPR036097 GO:0000155|GO:0007165
Stsc120920g00011 923 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 405 624 IPR036890 -
Stsc120920g00011 923 Coils Coil 328 351 - -
Stsc120920g00011 923 SMART HisKA_10 351 416 IPR003661 GO:0000155|GO:0007165
Stsc120920g00011 923 SMART HKATPase_4 463 629 IPR003594 -
Stsc120920g00011 923 CDD REC_hyHK_CKI1_RcsC-like 791 917 - -
Stsc120920g00011 923 Gene3D CHASE domain 83 297 IPR042240 -
Stsc120920g00011 923 Gene3D - 415 630 IPR036890 -
Stsc120920g00011 923 PANTHER TWO-COMPONENT HISTIDINE KINASE 33 914 - -
Stsc120920g00011 923 FunFam Histidine kinase 4 83 297 - -
Stsc120920g00011 923 CDD HATPase_EvgS-ArcB-TorS-like 468 627 - -
Stsc120920g00011 923 Pfam CHASE domain 82 263 IPR006189 -
Stsc120920g00011 923 Pfam His Kinase A (phospho-acceptor) domain 351 416 IPR003661 GO:0000155|GO:0007165
Stsc120920g00011 923 ProSiteProfiles Histidine kinase domain profile. 358 629 IPR005467 -
Stsc120920g00011 923 Pfam Response regulator receiver domain 791 916 IPR001789 GO:0000160
Stsc120920g00011 923 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 463 627 IPR003594 -
Stsc120920g00011 923 Gene3D - 324 414 - -
Stsc120920g00011 923 SMART REC_2 789 917 IPR001789 GO:0000160
Stsc120920g00011 923 SUPERFAMILY CheY-like 787 920 IPR011006 -
Stsc120920g00011 923 CDD HisKA 351 412 IPR003661 GO:0000155|GO:0007165
Stsc120920g00011 923 FunFam Histidine kinase 4 323 414 - -
Stsc120920g00011 923 PRINTS Bacterial sensor protein C-terminal signature 589 607 IPR004358 GO:0016310|GO:0016772
Stsc120920g00011 923 PRINTS Bacterial sensor protein C-terminal signature 554 568 IPR004358 GO:0016310|GO:0016772
Stsc120920g00011 923 PRINTS Bacterial sensor protein C-terminal signature 572 582 IPR004358 GO:0016310|GO:0016772
Stsc120920g00011 923 Gene3D - 785 923 - -
Stsc120920g00011 923 ProSiteProfiles Response regulatory domain profile. 790 921 IPR001789 GO:0000160
Stsc120920g00011 923 SMART CHASE_2 79 265 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120920g00011 Stsc-Chr120920 62240 65836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120920g00011 24 923 Miscellaneous Gene Families AT1G27320 67.025 0.0 1235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc120920g00011 CHASE 9.9e-37 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120920g00011 K14489 - gmx:100801546 1342.79