Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120920g00010 ATGGTTGCTTCACTTATAGCTTGTGGTGCATCTGCTGGAGCAGTGACAGATCCAAGTGCACAAGATCCGAAAGGCAAAACTGCTGCATCAATTGCAGAGAGCAGTGGGCATAAGGGACTGGCAGGATATCTTTCAGAGCGAGCTCTAACAAGCCATCTGTCATCCCTCACATTGCAAGAGAGTGAGCTATCTAAAAGTTCTGCAGAACTTGAAGCAGATTTAGCTGTTAGTAGTGTCTCCAAGGAAAATCTCACAGCCGGTGAGGATCAGGCTCCACTTAAACATACCTTGGCTGCTGTCAGAAATGCAACTCAGGCCGCTGCGCGTATACAATCCGCTTTTCGTTCGCATTCCTTCAGAAAGCGGAGGGCAAGAGAAGCTGCTGCTGCTACTGCTGGTGGTATCAATGCAGGTAGCATTGGTAACATTCCGGAGCTTTCCGCTATGTCAAAACTTGCCTTTCGGAACTCCAGGGATCACAATTCTGCTGCCTTATCTATTCAGAAGAAATTCCGAGGTTGGAAAGGTCGCAAAGATTTCTTAGAATTCCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGAAAGCACTACAAGGTGATATGGGCAGTTGGAATCTTGGACAAGGTTGTCCTGCGATGGCGGAGAAAAGGAGCTGGTCTACGAGGTTTCCGACAGGAGATGGAGACTAATACCGTGGATGAAAGTGAAGATGAAGATATTCTCAAGGTTTTCCGCAAACAGAAGGTAGACGTAGAAATACAAGAGGCTGTGTCAAGGGTGCTATCCATGGTTGATTCTCCAGATGCCCGTCAGCAATATCATCGCATGCTTGAGAAGTATCGTCAAGCTAAGGCTGAACTTGCCGGTACAAGTGAGGAAGCATCATTGTCAACATCCGTTACTGATGTTTTCAGTATGGAAGATGATATTTATCAGTTTCCTCAGGGCTAG 969 0.4665 MVASLIACGASAGAVTDPSAQDPKGKTAASIAESSGHKGLAGYLSERALTSHLSSLTLQESELSKSSAELEADLAVSSVSKENLTAGEDQAPLKHTLAAVRNATQAAARIQSAFRSHSFRKRRAREAAAATAGGINAGSIGNIPELSAMSKLAFRNSRDHNSAALSIQKKFRGWKGRKDFLEFRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRGFRQEMETNTVDESEDEDILKVFRKQKVDVEIQEAVSRVLSMVDSPDARQQYHRMLEKYRQAKAELAGTSEEASLSTSVTDVFSMEDDIYQFPQG 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120920g00010 322 ProSiteProfiles IQ motif profile. 103 132 IPR000048 GO:0005515
Stsc120920g00010 322 ProSiteProfiles IQ motif profile. 160 189 IPR000048 GO:0005515
Stsc120920g00010 322 Pfam IQ calmodulin-binding motif 104 122 IPR000048 GO:0005515
Stsc120920g00010 322 Pfam IQ calmodulin-binding motif 185 204 IPR000048 GO:0005515
Stsc120920g00010 322 Pfam IQ calmodulin-binding motif 162 180 IPR000048 GO:0005515
Stsc120920g00010 322 Gene3D - 160 208 - -
Stsc120920g00010 322 FunFam Calmodulin-binding transcription activator 2 159 207 - -
Stsc120920g00010 322 SMART iq_5 159 181 IPR000048 GO:0005515
Stsc120920g00010 322 SMART iq_5 102 124 IPR000048 GO:0005515
Stsc120920g00010 322 SMART iq_5 182 204 IPR000048 GO:0005515
Stsc120920g00010 322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 206 IPR027417 -
Stsc120920g00010 322 Coils Coil 279 299 - -
Stsc120920g00010 322 ProSiteProfiles IQ motif profile. 184 208 IPR000048 GO:0005515
Stsc120920g00010 322 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120920g00010 Stsc-Chr120920 58899 60409 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120920g00010 1 320 CAMTA Transcription Factor Family AT1G67310 64.706 4.59e-118 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120920g00010 K21596 - gmx:100814958 447.588