Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120920g00006 ATGCAGGTTGTTCGATCTCATCAGAGTCACACCAGCTTCTCCTCCTCCACTGGCTCCGTTTCAGCTACTCCGACCCTTCCTCTTTATCGCTCCGCTCCAGAGCTCGAAGTCAGGCTAGAAGATTTCGAATCTTTTGCCATCGATCGTCTCCGAGTTCTCAAGGGGATCTCTGATGGCTTGTCAAGGGGGAAGAAACCGGACGAAATGGAAAAATTGGTAAATGAGCTGTGGAAAACAAATATGAGACATCAAGATTCGTCTCAGGTTCTGAACAAGGATATTATATCTCATTTTGTTCTCCGTCTTGTGTATTGCAGAACGGAGGAATTGAGGAAATGGTTCCTTTCTATGGAATCTGCACTCTTTCGCCACCGTTTTCGTAATCAAACTGCTGAAGCTCAGCGGGCCATCATGGAAGAATTTGACCTTCCTTGCAAGGCTGTAAGCAATGCGGAATTTGAGAGCTTAAAAGAAAAATTGGGACAAGTTGCGCGTTCAATTGGTCATAACCTTTCTTTATCCACTGCGGATGCGATCTACTATAAGGTACCATTTGAAGAAGTTCCAGAGCTTGTAGCTGGACGGAAAGTATTTATAAACCAGGGATATGCATACGTTGCAATGAATCAGGTTGTTTCACTTGTAGCCACAATTTTCCGTAGTCTGCTGTCAAAGGCACTCATCCTAACAAACAGAAAATGGGCAACCTCAATTAGAGAACAAGAGCAACACAGGTTGACTCCTATTGTGGAAGCCCTGTGCTCGAGTTATTTAGGTCCTGATTATTCTCAGCCTAAAGAATATGGTGAGATATCATTAAAGGACATTGATCAGCTTGCCAAGAGCTCATTTCCTTTGTGCATGCGTCACCTATTTGAAAAGCTGAGAGAGGATCATCATTTAAAGCATGCAGGGAGGATGCAACTAGGCCTATTTCTCAAGGGTGTTGGCCTGAACGTAGATGATTCACTTGCATTTTGGAGAGAGGAGTTCTCTAAAAAGGATTATACTCCCTATTCTTGTCAAAAGATTATTTTATCAACTCCTGGTGTCGGAGATCATCATGGTTGCCCTTATCGACATTTTGGCGAGGAGAATTTAAGAGCTGCTCTCAGTAAAATGGGGGTTAATAGTCGGGCAATGGAAGATGTGATGGGCAAAGTGAGAAATAGAGATTATCAGTTGGCCTGCACCTTGACATTTGAAGCTCTTCATGCGGCACCATGTGATGCAGGGATAAACCATCCAAATCAATACTTCAGTGACAGTCAAAAGCTATTAAAGGCAAAGAAGGACTCTTCAGCCTAA 1308 0.4335 MQVVRSHQSHTSFSSSTGSVSATPTLPLYRSAPELEVRLEDFESFAIDRLRVLKGISDGLSRGKKPDEMEKLVNELWKTNMRHQDSSQVLNKDIISHFVLRLVYCRTEELRKWFLSMESALFRHRFRNQTAEAQRAIMEEFDLPCKAVSNAEFESLKEKLGQVARSIGHNLSLSTADAIYYKVPFEEVPELVAGRKVFINQGYAYVAMNQVVSLVATIFRSLLSKALILTNRKWATSIREQEQHRLTPIVEALCSSYLGPDYSQPKEYGEISLKDIDQLAKSSFPLCMRHLFEKLREDHHLKHAGRMQLGLFLKGVGLNVDDSLAFWREEFSKKDYTPYSCQKIILSTPGVGDHHGCPYRHFGEENLRAALSKMGVNSRAMEDVMGKVRNRDYQLACTLTFEALHAAPCDAGINHPNQYFSDSQKLLKAKKDSSA 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120920g00006 435 Gene3D - 1 253 - -
Stsc120920g00006 435 MobiDBLite consensus disorder prediction 1 21 - -
Stsc120920g00006 435 CDD PriL_PriS_Eukaryotic 28 423 IPR016558 -
Stsc120920g00006 435 PANTHER DNA PRIMASE LARGE SUBUNIT 17 334 IPR007238 GO:0006269
Stsc120920g00006 435 FunFam DNA primase large subunit 6 253 - -
Stsc120920g00006 435 Pfam Eukaryotic and archaeal DNA primase, large subunit 180 333 IPR007238 GO:0006269
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120920g00006 Stsc-Chr120920 21347 27466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120920g00006 1 430 Core DNA Replication Machinery Family AT1G67320 62.372 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120920g00006 K02685 - gmx:100816023 705.671