Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120919g00018 ATGGCATTCACTCTTAGTAGCTCTTATTGCATTGCATTATCCGTTCTTCTCATAGCATGCGCTGTTGTTATTGTTCCCTCTCATGGAGCCACAGTATCAGAACTGCTCCTCGCCGTGAAGGCTAAATTACAGAACACGCAAGAGTTATCTTCATGGAATCCATCTACAACTCCGTGTTCAGGAAGAAAAGCAAACTGGAAAGGTGTTCTCTGCAATAAAGGGGGACTAATAACCGGCTTGCAGCTTGAGAACATGGGCCTCAAGGGTGTCATTGATGTCGATTCTCTCAGGGGTTTACCAAATCTTAGAACCATAAGTTTCATGAATAACGAACTTGATGGTCCAATGCCACAAATCAACAATCTAACCGGTTTGAGGTCGGTGTTCCTTTCCAACAACAAGTTTTCTGGTGAGCTTCCGGACAATGCCTTCCAAGGCATGGTATGGTTGAAGAAAATCCATTTGTCAAACAACCAGTTTACAGGTCCTATTCCAGAAGCTTCTCTGCTCAAATTGCCGAGGCTTATAGAGTTGCAGCTGGATGGAAATCAATTTACTGGGCCTGTTCCTAACTTGCCTCATACTTCATTGACCTCAGTTAACTTTGCAAACAACAACTTGCAAGGCCCAATTCCAAATTCCATGTCCAAGTTGCCTGCTACTTCTTTTTCTGGTAATGAAGAGTTATGTGGGCCACCTTTGGGAGAATGTAAGAACCAGAATCAGAACCAAAACCAGAACCAGAATCAGAGCCAGAAGCAGAAAAATGATGAGAAAAGGAAGCACACAATCATGAGCATTGTGGTGGTTGTCATAGTTGTGTTGGTGGCATTGATTGTGATTGGTGTAGTTGTATTCATCCTTCTTCACCGTAGAAGACAAGCGAAAGAAGGAGAAGAAGAAGAGGAATCATCGATAGAGAATCAAGAAATAAGTGCACCGCAACTGAGGAAAGGGAAATCAAAGGAATTTGGAAGTGGGGTGAGAAGCAGGTCATTAAGATCTGTAAGCTCCACCCACAGCTGCAGAAGAGTGGATTACATGAAGTTGTCGTTCATAAGGGAAGACAGAGAGAGATTCGAGCTGCATGATTTGCTGAGAGCTTCAGCTGAGATCTTGGGAAGTGGAAGTTTCAGTTCTTCATACAGGGCTACTCTGCCCAAAGGGCAAATGATAGTGGTGAAGAGGTACAAGCAGATGAACAATTTAGCAAGGGATGAATTCCATGAACACATGAGAAGGATTGGAAGGTTGAATCACCCAAATCTGCTTCCTCTTGTGGCTTACTACTACAGAAGGGAAGAGAAGCTCTTGGTTACTGACTTAGTCAAGAATGGAAGCTTGGCTGTTCGCCTTCATGGGTACCAAGCTCTTGGGCTAGCAAGTCTTGATTGGGGAGCAAGGTTGAAGATTGTGAAAGGAATAGCGAAAGGTCTTGAATACCTGTACAAGGATTTGCCAAGCCTTATAGCACCCCATGGAAACCTTAAATCGTGCAATATTCTTCTAACAGAATCTCTTGAGCCACTCCTGTGTGACTATGGATTGATCCCACTAATAAACCAGGAACTCGCCAAGGACGTGTTGGTTGTGTACAACTCCCCAGAGTACTTGAAAAATGGAAGAATCACAAAGAAGAGTGACGTGTGGTGCCTTGGAATCTTGATCCTGGAGATTCTGACTGGCAAGCTCCCTGCGGATTCCTTGCAGCAGGGTAAAGGGAGCGAGATGAATCTGGCAAATTGGGTTCTTTCTGTTGACCCAGCAAAAAGGGTCAAGGAGGTGTTTGATAAGGAGTTGATGGGAGCGATGAAGAGCAGTGAGGGAGAGATGGTGAGGCTGTTGAATATTGCCATGGCATGCTGTGAGGAGAATGCGGAGAAAAGGTGGGAGTTGAAAGAAGCAGTTGAGAAGATTGAAGAGGTTAGAGAGAAGGATCAAGATGATGATTTCTTCACTGTTGCTTCTGATGCAGATGTAGGGTTTGCAAGGGGTTTGTCTGGTGAACTCAATATCTAG 2019 0.4438 MAFTLSSSYCIALSVLLIACAVVIVPSHGATVSELLLAVKAKLQNTQELSSWNPSTTPCSGRKANWKGVLCNKGGLITGLQLENMGLKGVIDVDSLRGLPNLRTISFMNNELDGPMPQINNLTGLRSVFLSNNKFSGELPDNAFQGMVWLKKIHLSNNQFTGPIPEASLLKLPRLIELQLDGNQFTGPVPNLPHTSLTSVNFANNNLQGPIPNSMSKLPATSFSGNEELCGPPLGECKNQNQNQNQNQNQSQKQKNDEKRKHTIMSIVVVVIVVLVALIVIGVVVFILLHRRRQAKEGEEEEESSIENQEISAPQLRKGKSKEFGSGVRSRSLRSVSSTHSCRRVDYMKLSFIREDRERFELHDLLRASAEILGSGSFSSSYRATLPKGQMIVVKRYKQMNNLARDEFHEHMRRIGRLNHPNLLPLVAYYYRREEKLLVTDLVKNGSLAVRLHGYQALGLASLDWGARLKIVKGIAKGLEYLYKDLPSLIAPHGNLKSCNILLTESLEPLLCDYGLIPLINQELAKDVLVVYNSPEYLKNGRITKKSDVWCLGILILEILTGKLPADSLQQGKGSEMNLANWVLSVDPAKRVKEVFDKELMGAMKSSEGEMVRLLNIAMACCEENAEKRWELKEAVEKIEEVREKDQDDDFFTVASDADVGFARGLSGELNI 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120919g00018 672 Gene3D Ribonuclease Inhibitor 193 241 IPR032675 -
Stsc120919g00018 672 Gene3D Phosphorylase Kinase; domain 1 333 441 - -
Stsc120919g00018 672 Coils Coil 625 645 - -
Stsc120919g00018 672 SUPERFAMILY Protein kinase-like (PK-like) 371 641 IPR011009 -
Stsc120919g00018 672 MobiDBLite consensus disorder prediction 236 252 - -
Stsc120919g00018 672 MobiDBLite consensus disorder prediction 213 257 - -
Stsc120919g00018 672 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 647 IPR046959 -
Stsc120919g00018 672 MobiDBLite consensus disorder prediction 297 330 - -
Stsc120919g00018 672 SUPERFAMILY L domain-like 39 234 - -
Stsc120919g00018 672 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Stsc120919g00018 672 Pfam Leucine rich repeat 124 185 IPR001611 GO:0005515
Stsc120919g00018 672 Gene3D Ribonuclease Inhibitor 31 192 IPR032675 -
Stsc120919g00018 672 FunFam pollen receptor-like kinase 1 336 442 - -
Stsc120919g00018 672 Gene3D Transferase(Phosphotransferase) domain 1 443 660 - -
Stsc120919g00018 672 Pfam Protein tyrosine and serine/threonine kinase 371 638 IPR001245 GO:0004672|GO:0006468
Stsc120919g00018 672 ProSiteProfiles Protein kinase domain profile. 367 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120919g00018 672 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120919g00018 Stsc-Chr120919 76159 78577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120919g00018 25 669 Receptor kinase-like Gene Family AT5G35390 49.772 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc120919g00018 PK_Tyr_Ser-Thr 8.3e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120919g00018 - - aip:107633360 1054.66